Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq79071 212 7e-50 seq222524 187 3e-42 seq65234 174 2e-38 seq209331 131 2e-25 seq1462 122 9e-23 seq213894 120 3e-22 seq260686 93.3 5e-14 >seq79071 Length=852 Score = 212 bits (234), Expect = 7e-50 Identities = 158/185 (85%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||| | |||||||||||||||||| | || |||||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 ||||||||||||||||| ||||| ||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 63737 TTCAA 63741 ||||| Sbjct 361 TTCAA 365 >seq222524 Length=8439 Score = 187 bits (206), Expect = 3e-42 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63564 CTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 63623 ||||||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 4032 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 4091 Query 63624 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 63683 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 4092 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 4151 Query 63684 GCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 63739 || |||||||| |||||| | | ||| ||||| |||||||| || ||||| || || Sbjct 4152 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq65234 Length=1614 Score = 174 bits (192), Expect = 2e-38 Identities = 334/490 (68%), Gaps = 7/490 (1%) Strand=Plus/Plus Query 141624 ACAAAGTAATGTAATCGTTTTTTCCAA--AACGTTCCAT----CATCAAATCATTCAGTT 141677 || || ||||||||| |||||||| | | | ||| | ||| || | ||| | || Sbjct 607 ACTAAATAATGTAATT-TTTTTTCCTAGTAGCATTCTTTGATACATTAATTTATTAATTT 665 Query 141678 GAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAA 141737 | ||| ||||||| | |||||| | | |||||||| | ||| | |||||||| |||| Sbjct 666 GTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAA 725 Query 141738 CGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCAC 141797 | | | |||||||| ||| | |||||| || || ||| || |||| || || || || | Sbjct 726 CTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTC 785 Query 141798 GAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAA 141857 || |||||| || ||||| ||||| ||||| | || || ||||| ||||||||||| Sbjct 786 TAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATAC 845 Query 141858 CACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAA 141917 || ||||| | |||| || | | || | ||| || ||||| |||| Sbjct 846 ATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAG 905 Query 141918 CGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCAGAAGCCTTAT 141977 ||||||| || ||||| || |||| ||| | ||||| ||||||| | || | || Sbjct 906 CGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCAT 965 Query 141978 TGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCG 142037 | ||||| || || |||| | ||||| | ||||| |||||||| || ||||| | Sbjct 966 TAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTG 1025 Query 142038 GAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGCTT 142097 | || | || | |||||| || || || | || || | ||| || | ||| | Sbjct 1026 GTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCAT 1085 Query 142098 CATAAAAACG 142107 |||||| || Sbjct 1086 TATAAAAGCG 1095 >seq209331 Length=9407 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63566 TTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 63625 || ||| ||||| || | || || || |||||||||| |||||| ||||||||||| Sbjct 312 TTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCG 371 Query 63626 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 63685 || || |||||||| || || |||||||||||||||||||| || ||||| | | || Sbjct 372 GACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGC 431 Query 63686 ATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63742 || ||| ||||| | || |||||||||||| ||||| ||||| ||||| || Sbjct 432 GTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 488 >seq1462 Length=4781 Score = 122 bits (134), Expect = 9e-23 Identities = 286/432 (66%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 141676 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 141735 ||| || || ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 141736 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 141795 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 1371 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 1312 Query 141796 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 141855 || | || || || || || ||||| || || ||||| || ||||| | || || || Sbjct 1311 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 1252 Query 141856 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACC 141915 | ||| |||||| ||||||| | || ||| |||||||| || Sbjct 1251 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 1192 Query 141916 AACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCAGAAGCCTT 141975 | | || ||||| || || ||||||| || | |||| ||| || | | ||||| Sbjct 1191 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 1132 Query 141976 ATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGT 142035 |||||||| | || ||| || ||| |||| || ||||| || || || ||||| Sbjct 1131 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 1072 Query 142036 CGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGC 142095 ||| || || |||||||| || || || || || ||||| | || || || || Sbjct 1071 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 1012 Query 142096 TTCATAAAAACG 142107 |||||||| || Sbjct 1011 ATCATAAAAGCG 1000 >seq213894 Length=28734 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||||| || | ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 ||| ||||| || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 | | || || ||| ||||| | || ||||| ||||| ||||| ||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 63737 TTCAAT 63742 |||||| Sbjct 8809 TTCAAT 8804 >seq260686 Length=13603 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 141671 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 141730 ||||| || || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 5584 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 5525 Query 141731 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 141790 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 5524 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 5465 Query 141791 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 141850 ||||| || | || ||||| || || || || || || ||||| || || || | || Sbjct 5464 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 5405 Query 141851 GGAATAACACCAGTATGGCGTACTTCACC 141879 ||||| || || ||| | ||||||| Sbjct 5404 GGAATGCAGCCGGTGTGGAATGCTTCACC 5376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536989601771080