Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq201909 405 2e-108 seq369136 150 7e-32 seq154733 123 1e-23 seq189010 109 2e-19 seq147806 109 2e-19 seq286911 102 3e-17 seq203346 100 1e-16 seq462907 98.7 4e-16 seq235341 91.5 6e-14 seq200655 87.8 7e-13 seq248231 82.4 3e-11 >seq201909 Length=21394 Score = 405 bits (448), Expect = 2e-108 Identities = 455/604 (75%), Gaps = 6/604 (1%) Strand=Plus/Minus Query 5826 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 5885 |||| |||||||| || ||||| | || || |||||||| || | ||||||||| | Sbjct 20631 TTCACCGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCT 20572 Query 5886 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCA 5945 ||||||||||||||||||| || ||||| | ||||| ||||| || |||||||| | Sbjct 20571 CGATGAACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGA 20512 Query 5946 CGACATAATGCAGGCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 6005 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 20511 TAATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCAT 20452 Query 6006 CTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTT--ATGGC 6063 | || | || |||||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 20451 CCTTGCCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGC--ACTTTTGATGGC 20394 Query 6064 CTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTC 6123 ||||||||||| |||||||||||||||||||| || || || || ||||| |||| || Sbjct 20393 ATCGAAACCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTC 20334 Query 6124 AAGGCCATTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTC 6183 ||||| || |||||||| | || || || ||||| |||||||||| | || || Sbjct 20333 GAGGCCTCGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATC 20274 Query 6184 GCGATAGATGATCGGGGATTCAATAACATTCACGCCGGAAGTGAACTCAAACAGGGTTCT 6243 |||||||| ||| || | ||| | ||| ||||| | ||||||||||| || | ||| Sbjct 20273 GCGATAGAGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCT 20214 Query 6244 GGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGGGGATTTCCGGAGCCAC 6303 || || || | ||| || ||||| || ||||| || || | ||||||||||| Sbjct 20213 CGCTGAGTCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCAC 20154 Query 6304 ACCGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTT 6363 || ||||| ||||| || | || ||||||||||||||| |||||||| | ||| || Sbjct 20153 GCCAGTGCATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTT 20094 Query 6364 CTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGA-ACTTCTGAAGCGGTGATGACGCCGA 6422 | || ||| ||||||| || ||||| ||| || || || || |||||||||| Sbjct 20093 GGTGCCGCTGCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGA 20035 Query 6423 GCCG 6426 | || Sbjct 20034 GTCG 20031 Score = 89.7 bits (98), Expect = 2e-13 Identities = 235/359 (65%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 8019 GCGGCTTTGATAGTCATATCATCTGAATCAAATATTCCTGATGTATCGATATCGGTAATT 8078 ||||| ||||| ||||| || || |||||||| | || || || | || | ||| Sbjct 17310 GCGGCCTTGATTGTCATGTCGTCAGAATCAAAGAGGCCGTCAGTTTCTACGGCGATGATT 17251 Query 8079 CTTATTCCTTCGCTACCATCCATTGGAGGCCATCCTTCCTGACCATTTCCATCATTCCAG 8138 | | |||| ||||||||||| || ||||| ||||| |||||||||||||||| ||| Sbjct 17250 TTGAACCCTTGACTACCATCCATAGGGGGCCAGCCTTCTTGACCATTTCCATCATCCCAA 17191 Query 8139 TCGAACTCACACACAACACCATATGCATTTAAGTCGCTTGAAATTGCTATAAGCAGAGCA 8198 |||||| | || |||||| | || | || | | | | | | | Sbjct 17190 TCGAACAGGGAAACGGCACCATGGGTGTTGTATCCGTGCTCATATACCAACGGAATAATG 17131 Query 8199 TGTTGCGCCAGCATGATTAATACAGCATTTAATAAAGAGCCGTGTTTATTGAGTCGGTAT 8258 || || ||||||||||||| || ||||| | | ||||| || ||| || ||| Sbjct 17130 TGCTGTGCCAGCATGATTAGAACGGCATTGAGAACGCTTCCGTGCTTCATGACGCGATAT 17071 Query 8259 TCAGAGTCTGACCAGAAATTATTAATCTGGTGAAGTTTTTCCTCTGTCATTACGTCATGG 8318 ||| || |||||| | ||||||| ||| | || || | | ||| ||| Sbjct 17070 TCATGATCGCTCCAGAATTCGTTAATCTCAGTCAGTGCTGAATCAGTTACGATGTCGTGG 17011 Query 8319 TCGATTTCAATTTCTATTGATGCTTTCCAGTCGTAATCAATGATGTATTTTTTGATGTT 8377 || ||||| | |||| ||| |||||||| || |||| |||| ||||| | ||| Sbjct 17010 TCAATTTCCACGGTTATTTCTGCCTTCCAGTCATAGTCAACCGTGTACTTTTTAACGTT 16952 >seq369136 Length=224 Score = 150 bits (166), Expect = 7e-32 Identities = 142/181 (78%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 5826 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 5885 |||| |||||||| || |||||| | || || ||||||||||| | |||||||||| Sbjct 43 TTCACCGCCATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATTTTTT 102 Query 5886 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCA 5945 ||||||| ||||||||||| || || || | |||||| ||||| || |||||||| | Sbjct 103 CGATGAATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCAACGA 162 Query 5946 CGACATAATGCAGGCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 6005 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 163 TTATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCAT 222 Query 6006 C 6006 | Sbjct 223 C 223 >seq154733 Length=15709 Score = 123 bits (136), Expect = 1e-23 Identities = 248/359 (69%), Gaps = 29/359 (8%) Strand=Plus/Minus Query 57498 CTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCGACCTCCGTCTGACCGGTTCGGAT 57557 ||||||||||| | ||| || ||| || |||| ||||| | ||||| ||||| Sbjct 11597 CTCTTACTTCTGCGGGTCGCAGGCTATAAACGCAGCCACCTCTGCGATACCGGCGCGGAT 11538 Query 57558 TCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCCGTCACTATGACGGTTAAACAGAT 57617 |||||||| || ||||| |||||||| ||||| | | | | | || | ||||| Sbjct 11537 CCGCACCTCACACAGGTCCTTCCTCGTCACCAGAACGGCGGCCAGCGCCGTCATACAGAG 11478 Query 57618 GACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTCATAGCCTGCTTCTCCTTGCCTTT 57677 || ||| |||||||| || |||||||| ||||| ||||| | ||| |||||||| ||| Sbjct 11477 GATGATAAGGGCGATAAAGATCGCCTTGTGCTGTTTCAT-GGTTGC-TCTCCTTGTCTTG 11420 Query 57678 CGGCACGTAAGAGGCTAACCTACATG-TGTTCAGCAT-GGATTGAGCCTCAGATTAATGT 57735 || | |||||| |||||||| ||| || | ||||| |||| | ||||| | || || | Sbjct 11419 CGACGTGTAAGACGCTAACCT-GATGTTGCTAAGCATAGGATAG-GCCTCGGGTTGAT-T 11363 Query 57736 TAAGCGTCTTGCCGGACGCGTAATGTTAACTGGGGCTTTTCTCTATCTGCCGT-TG--GT 57792 || || || | ||||||||||||| |||||||| || Sbjct 11362 GAAAAATC-------ACTC------------GGGGCTTTTCTCTTTCTGCCGTCTGCAAA 11322 Query 57793 GTTCATGCCCGAGGCAGATAGCCTCAAGCACCCGCAGCAATTCTACTTAACTCTCCTTT 57851 ||||| ||||||| |||||||||||||||| | ||| ||| | ||| | ||| Sbjct 11321 CAGCATGCTTAAGGCAGAAAGCCTCAAGCACCCGCGGGAATAATACAAACCTCACGTTT 11263 >seq189010 Length=996 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 20611 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 20670 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 849 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 790 Query 20671 CCAGCAAGGGCCA 20683 ||||||||||||| Sbjct 789 CCAGCAAGGGCCA 777 >seq147806 Length=6067 Score = 109 bits (120), Expect = 2e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197 ||||||||||| || |||||||| |||| |||||| || ||| ||| ||||| || Sbjct 3802 TCAGGCATCCACGCCCCATAAACGTTGTGGACCATTTGAGCATTGGTGTGACCCATTTGA 3861 Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 257 | ||||||||| | ||||| ||||| | || || | |||||||||||| || || || Sbjct 3862 GTTGCAATAAAGTTAGGGTTAGCTCCTGCAGCCAATGACCAGCACGCATATGTGTGTCGA 3921 Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTA 297 |||||||| ||||| | | | ||||| ||| ||||| Sbjct 3922 GACTGATATGCTTTCCTGTCTGTAATACCTGCTACTTTTA 3961 >seq286911 Length=6367 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 20611 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 20670 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 5790 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 5731 Query 20671 CCAGCAAGGGCCACCATAT 20689 |||||| ||||||||| || Sbjct 5730 CCAGCAGGGGCCACCAAAT 5712 >seq203346 Length=2488 Score = 100 bits (110), Expect = 1e-16 Identities = 102/127 (80%), Gaps = 7/127 (6%) Strand=Plus/Minus Query 26191 GCGCATCTCACGCGCATCTCACAACACAGAACCTTT-CAGGATGACCCTTGAGGATACCG 26249 ||||| | ||||||| | | | | |||||||||| ||||||| ||||||||| |||| Sbjct 1119 GCGCACCGCACGCGCTT---AAATCCCAGAACCTTTTCAGGATGCACCTTGAGGA-ACCG 1064 Query 26250 GTTTGGCTGTCGGTGCCTTTCTGTGGGCTGGATTCCTGTGAGACAAGGTTCATCACTAAA 26309 | | | ||||||| || |||||| |||| | |||||||| |||| |||||||||||||| Sbjct 1063 GCTAG-CTGTCGGAGC-TTTCTGGGGGCCGTCTTCCTGTGCGACAGGGTTCATCACTAAA 1006 Query 26310 AGGAAAT 26316 ||| ||| Sbjct 1005 AGGTAAT 999 >seq462907 Length=336 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 20595 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 20651 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 116 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 57 Query 20652 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 20689 | |||||||||||||| |||||| ||||||||| || Sbjct 56 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 19 >seq235341 Length=2087 Score = 91.5 bits (100), Expect = 6e-14 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 11066 GCTATGCAGAAATCGCCGGGCTCAACAGCTTGCTCAGGGTCAACCAGAATTAACATCCCG 11125 |||| ||||||||| ||| ||||| | ||| || || ||||| |||| ||| || Sbjct 660 GCTACGCAGAAATCACCGCTTTCAACTGGAACCTCTGGATCTACCAGTATTAGCATTCCC 601 Query 11126 TCAGGAAAACTAGGTTTGGAACCTGTTGGTGCGGTCATTGAGTTACCTTCAACCTCAAGC 11185 || || ||||| ||| || ||| ||||| ||||| |||| |||| |||||||||| Sbjct 600 TCTGGGAAACTTGGTCTGCTTCCTTGAGGTGCCGTCATCGAGTGACCTGAAACCTCAAGC 541 Query 11186 CAGAATGCAGAGTCACTGGCTTTTTTGGTTG-TGCTTACCAATCTCT 11231 || |||| | | |||||| ||||||| ||| ||||||||| Sbjct 540 CAAAATGAATTCTTTGAGGCTTTCTTGGTTGAGGCTATCCAATCTCT 494 >seq200655 Length=6025 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 57059 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 57118 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 1024 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 1083 Query 57119 TCTTTCGGAGA-AACATTCTGCCCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 57174 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 1084 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 1139 Query 57175 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 57234 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 1140 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 1199 Query 57235 TTCAAGGATAACCCATGCATCATC 57258 ||| || | |||||||| ||||| Sbjct 1200 TTCCAGAACGACCCATGCGTCATC 1223 >seq248231 Length=1874 Score = 82.4 bits (90), Expect = 3e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 12339 CAATCCACAGGAGTAATTATGACAAAACAACTCAGTCCTTACCAGGACAAAATTCACAAA 12398 ||| | ||||||||||||||||||||| | | | || |||||||||||||| || ||| Sbjct 1731 CAAACAACAGGAGTAATTATGACAAAAAAGCGCCGTTCTTACCAGGACAAACCGCATAAA 1672 Query 12399 CACATACTACGTGATCGCTTCCT 12421 ||||||| ||||| |||| ||| Sbjct 1671 AACATACTTCGTGACCGCTACCT 1649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193737426880208