Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq201909 390 4e-104 seq369136 134 5e-27 seq154733 123 1e-23 seq189010 109 2e-19 seq147806 109 2e-19 seq286911 102 3e-17 seq203346 100 1e-16 seq462907 98.7 4e-16 seq200655 87.8 7e-13 >seq201909 Length=21394 Score = 390 bits (432), Expect = 4e-104 Identities = 445/595 (75%), Gaps = 2/595 (0%) Strand=Plus/Minus Query 5834 CCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5893 |||||| || ||| | | || || |||||||| || | ||||||||| |||||||| Sbjct 20624 CCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCTCGATGAA 20565 Query 5894 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 5953 |||||||||||| || ||||| | ||||| ||||| | ||||||| | | | Sbjct 20564 CTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGATAATGTG 20505 Query 5954 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 6013 ||| | ||||||||||||||||| ||||||||||| || || ||||||||||| || | Sbjct 20504 ATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATCCTTGCC 20445 Query 6014 TGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCTCGAAACC 6073 || |||||||||||||| ||||||||||||||||| || ||| ||||| |||||||| Sbjct 20444 CGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGCACTTTTGATGGCATCGAAACC 20385 Query 6074 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTT 6133 ||| |||||||||||||||||||| || || || || ||||| |||| || ||||| Sbjct 20384 ACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTCGAGGCCTCG 20325 Query 6134 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 6193 || |||||||| | || || || ||||| ||||| |||| | || |||||||||| Sbjct 20324 CCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATCGCGATAGAG 20265 Query 6194 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCTGGCGTCGTT 6253 ||| || | ||||| ||| ||||| | ||||||||||| || | ||| || || Sbjct 20264 GATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCTCGCTGAGTC 20205 Query 6254 CTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGAGCCACACCGGTGCA 6313 || | ||| || ||||| || || ||||| || || || ||||||||||| || ||||| Sbjct 20204 TTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCACGCCAGTGCA 20145 Query 6314 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 6373 ||||| || | || ||||||||||||||| |||||||| | ||| || | || Sbjct 20144 TACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTTGGTGCCGCT 20085 Query 6374 TCGGGGTTTTGCTATTACGTTGTGA-ATTTCTGAAGCTGTGATGACGCCGAGCCG 6427 || || |||| || ||||| ||| | || || || ||||||||||| || Sbjct 20084 GCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGAGTCG 20031 Score = 215 bits (238), Expect = 2e-51 Identities = 255/343 (74%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 14068 TTCGTCCGAGAATTCTGGCGAATCCTCTGACCAGCCA-GAAAACGATCTTTCTGTGGTTA 14126 |||||||||||||||| ||||||||||||| |||| | ||||| ||| | | ||| Sbjct 12138 TTCGTCCGAGAATTCTAACGAATCCTCTGACAAGCCTCGCAAACGC-CTTCCGGCAGTTC 12080 Query 14127 AACCGGATGCTGCAATTCAGAGCGGCAGCAAGTGGGGAACAGCAGAAGACCTGACCGCCG 14186 | | || || | ||||||||| || | ||||||||||| | || ||||| | || | Sbjct 12079 GAGCAGAAGCAGGAATTCAGAGTGGAAATAAGTGGGGAACTCCTGATGACCTTAAAGCTG 12020 Query 14187 CAGAGTGGATGTTTGACATGGTGAAGACCATCGCACCATCAGCCAGAAAACCGAATTTTG 14246 | ||||||||||| || | || ||| | |||| || || |||| | | || |||| Sbjct 12019 CTGAGTGGATGTTCGATGTCGTCAAGTCAATCGAGCCTTCTGCCAAACAGCCAGCCTTTG 11960 Query 14247 CAGGGTGGGCTAACGATATCCGCCTGATGCGTGAACGTGACGGACGTAACCACCGCGACA 14306 | || ||||| ||||| || || |||||||| || ||||| || |||| ||||||| Sbjct 11959 CCGGATGGGCGAACGACATACGACTGATGCGGGAGAAAGACGGTCGGGACCATCGCGACA 11900 Query 14307 TGTGCGTGCTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCGGTAACGTGCTAAGTC 14366 ||||| |||||||||||||| | ||||||| |||||||| || |||||||| | | Sbjct 11899 TGTGCAGCCTGTTCCGCTGGGCCAGTCAGGACAGCTTCTGGTGTGGCAACGTGCTTTGCC 11840 Query 14367 CGGCCAAACTCCGCGACAAGTGGACCCAACTCGAAATCAACCG 14409 | ||||| || ||||| |||||| | || || | |||||| || Sbjct 11839 CTGCCAAGCTTCGCGAGAAGTGGTCACAGCTGGTAATCAAGCG 11797 Score = 95.1 bits (104), Expect = 5e-15 Identities = 246/374 (66%), Gaps = 1/374 (0%) Strand=Plus/Minus Query 8006 TAAAGCCGCACTCAGGCGGCCTTGATAGTCATATCATCTGAATCAAATATTCCTGATGTA 8065 ||||| | ||| || |||||||||| ||||| || || |||||||| | || || Sbjct 17324 TAAAGGCCGACTAAG-CGGCCTTGATTGTCATGTCGTCAGAATCAAAGAGGCCGTCAGTT 17266 Query 8066 TCGATATCGGTAATTCTTATTCCTTCGCTACCATCCATTGAAGGCCATCCTTCCTGACCA 8125 || | || | ||| | | |||| ||||||||||| | ||||| ||||| |||||| Sbjct 17265 TCTACGGCGATGATTTTGAACCCTTGACTACCATCCATAGGGGGCCAGCCTTCTTGACCA 17206 Query 8126 TTTCCATCATTCCAGTCGAACTCACACACAACACCATATGCATTTAAGTCGCTTGAAATT 8185 |||||||||| ||| |||||| | || |||||| | || | || | | Sbjct 17205 TTTCCATCATCCCAATCGAACAGGGAAACGGCACCATGGGTGTTGTATCCGTGCTCATAT 17146 Query 8186 GCTATAAGCAGAGCATGTTGCGCCAGCATGATTAATACAGCATTTAATACAGAGCCGTGT 8245 | | | | | || || ||||||||||||| || ||||| | || ||||| Sbjct 17145 ACCAACGGAATAATGTGCTGTGCCAGCATGATTAGAACGGCATTGAGAACGCTTCCGTGC 17086 Query 8246 TTATTGAGTCGGTATTCAGAGTCTGACCAGAAATTATTAATCTGGTGAAGTTTTTCCTCT 8305 || ||| || |||||| || |||||| | ||||||| ||| | || Sbjct 17085 TTCATGACGCGATATTCATGATCGCTCCAGAATTCGTTAATCTCAGTCAGTGCTGAATCA 17026 Query 8306 GTCATTACGTCATGGTCGATTTCAATTTCTATTGATGCTTTCCAGTCGTAATCAATGATG 8365 || | | ||| ||||| ||||| | |||| ||| |||||||| || |||| || Sbjct 17025 GTTACGATGTCGTGGTCAATTTCCACGGTTATTTCTGCCTTCCAGTCATAGTCAACCGTG 16966 Query 8366 TATTTTTTGATGTT 8379 || ||||| | ||| Sbjct 16965 TACTTTTTAACGTT 16952 >seq369136 Length=224 Score = 134 bits (148), Expect = 5e-27 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 5834 CCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5893 |||||| || ||| || | || || ||||||||||| | ||||||||||||||||| Sbjct 50 CCATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATTTTTTCGATGAA 109 Query 5894 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 5953 ||||||||||| || || || | |||||| ||||| | ||||||| | | | Sbjct 110 TTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCAACGATTATGTG 169 Query 5954 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATC 6007 ||| | ||||||||||||||||| ||||||||||| || || ||||||||||| Sbjct 170 ATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATC 223 >seq154733 Length=15709 Score = 123 bits (136), Expect = 1e-23 Identities = 248/359 (69%), Gaps = 29/359 (8%) Strand=Plus/Minus Query 58457 CTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCGACCTCCGTCTGACCGGTTCGGAT 58516 ||||||||||| | ||| || ||| || |||| ||||| | ||||| ||||| Sbjct 11597 CTCTTACTTCTGCGGGTCGCAGGCTATAAACGCAGCCACCTCTGCGATACCGGCGCGGAT 11538 Query 58517 TCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCCGTCACTATGACGGTTAAACAGAT 58576 |||||||| || ||||| |||||||| ||||| | | | | | || | ||||| Sbjct 11537 CCGCACCTCACACAGGTCCTTCCTCGTCACCAGAACGGCGGCCAGCGCCGTCATACAGAG 11478 Query 58577 GACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTCATAGCCTGCTTCTCCTTGCCTTT 58636 || ||| |||||||| || |||||||| ||||| ||||| | ||| |||||||| ||| Sbjct 11477 GATGATAAGGGCGATAAAGATCGCCTTGTGCTGTTTCAT-GGTTGC-TCTCCTTGTCTTG 11420 Query 58637 CGGCACGTAAGAGGCTAACCTACATG-TGTTCAGCAT-GGATTGAGCCTCAGATTAATGT 58694 || | |||||| |||||||| ||| || | ||||| |||| | ||||| | || || | Sbjct 11419 CGACGTGTAAGACGCTAACCT-GATGTTGCTAAGCATAGGATAG-GCCTCGGGTTGAT-T 11363 Query 58695 TAAGCGTCTTGCCGGACGCGTAATGTTAACTGGGGCTTTTCTCTATCTGCCGT-TG--GT 58751 || || || | ||||||||||||| |||||||| || Sbjct 11362 GAAAAATC-------ACTC------------GGGGCTTTTCTCTTTCTGCCGTCTGCAAA 11322 Query 58752 GTTCATGCCCGAGGCAGATAGCCTCAAGCACCCGCAGCAATTCTACTTAACTCTCCTTT 58810 ||||| ||||||| |||||||||||||||| | ||| ||| | ||| | ||| Sbjct 11321 CAGCATGCTTAAGGCAGAAAGCCTCAAGCACCCGCGGGAATAATACAAACCTCACGTTT 11263 >seq189010 Length=996 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21120 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21179 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 849 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 790 Query 21180 CCAGCAAGGGCCA 21192 ||||||||||||| Sbjct 789 CCAGCAAGGGCCA 777 >seq147806 Length=6067 Score = 109 bits (120), Expect = 2e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197 ||||||||||| || |||||||| |||| |||||| || ||| ||| ||||| || Sbjct 3802 TCAGGCATCCACGCCCCATAAACGTTGTGGACCATTTGAGCATTGGTGTGACCCATTTGA 3861 Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 257 | ||||||||| | ||||| ||||| | || || | |||||||||||| || || || Sbjct 3862 GTTGCAATAAAGTTAGGGTTAGCTCCTGCAGCCAATGACCAGCACGCATATGTGTGTCGA 3921 Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTA 297 |||||||| ||||| | | | ||||| ||| ||||| Sbjct 3922 GACTGATATGCTTTCCTGTCTGTAATACCTGCTACTTTTA 3961 >seq286911 Length=6367 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 21120 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21179 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 5790 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 5731 Query 21180 CCAGCAAGGGCCACCATAT 21198 |||||| ||||||||| || Sbjct 5730 CCAGCAGGGGCCACCAAAT 5712 >seq203346 Length=2488 Score = 100 bits (110), Expect = 1e-16 Identities = 102/127 (80%), Gaps = 7/127 (6%) Strand=Plus/Minus Query 26723 GCGCATCTCACGCGCATCTCACAACACAGAACCTTT-CAGGATGACCCTTGAGGATACCG 26781 ||||| | ||||||| | | | | |||||||||| ||||||| ||||||||| |||| Sbjct 1119 GCGCACCGCACGCGCTT---AAATCCCAGAACCTTTTCAGGATGCACCTTGAGGA-ACCG 1064 Query 26782 GTTTGGCTGTCGGTGCCTTTCTGTGGGCTGGATTCCTGTGAGACAAGGTTCATCACTAAA 26841 | | | ||||||| || |||||| |||| | |||||||| |||| |||||||||||||| Sbjct 1063 GCTAG-CTGTCGGAGC-TTTCTGGGGGCCGTCTTCCTGTGCGACAGGGTTCATCACTAAA 1006 Query 26842 AGGAAAT 26848 ||| ||| Sbjct 1005 AGGTAAT 999 >seq462907 Length=336 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 21104 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 21160 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 116 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 57 Query 21161 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 21198 | |||||||||||||| |||||| ||||||||| || Sbjct 56 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 19 >seq200655 Length=6025 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 58018 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 58077 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 1024 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 1083 Query 58078 TCTTTCGGAGA-AACATTCTGACCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 58133 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 1084 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 1139 Query 58134 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 58193 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 1140 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 1199 Query 58194 TTCAAGGATAACCCATGCATCATC 58217 ||| || | |||||||| ||||| Sbjct 1200 TTCCAGAACGACCCATGCGTCATC 1223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196053216430464