Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq201909 412 1e-110 seq235341 224 3e-54 seq150516 147 7e-31 seq369136 138 3e-28 >seq201909 Length=21394 Score = 412 bits (456), Expect = 1e-110 Identities = 456/603 (76%), Gaps = 6/603 (1%) Strand=Plus/Minus Query 31348 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 31407 ||| |||||||| || ||||| | || || |||||||| || | ||||||||| || Sbjct 20630 TCACCGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCTC 20571 Query 31408 GATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCAC 31467 ||||||||||||||| || || ||||| | ||||| ||||| || ||||||| | Sbjct 20570 GATGAACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGAT 20511 Query 31468 GACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATT 31527 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 20510 AATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATC 20451 Query 31528 TTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTT--ATGGCC 31585 || | ||| |||||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 20450 CTTGCCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGC--ACTTTTGATGGCA 20393 Query 31586 TCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCA 31645 ||||||||||| |||||||||||||||||||| || || || || ||||| |||| ||| Sbjct 20392 TCGAAACCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTCG 20333 Query 31646 AGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCG 31705 ||||| || |||||||| | || || || ||||| |||||||||| | || ||| Sbjct 20332 AGGCCTCGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATCG 20273 Query 31706 CGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTG 31765 ||||||| ||| || | ||||| ||| ||||| | ||||| ||||| || | ||| Sbjct 20272 CGATAGAGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCTC 20213 Query 31766 GCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACA 31825 || || || | ||| || ||||| || ||||| || || || || ||||||||||| Sbjct 20212 GCTGAGTCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCACG 20153 Query 31826 CCGGTGCAAACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTC 31885 || ||||| ||||| || | || ||||||||||||||| |||||||| | ||| || Sbjct 20152 CCAGTGCATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTTG 20093 Query 31886 TTTCCGGAGCGGGGTTTTGCTATCACGTTGTGA-ACTTCTGAAGCGGTGATGACGCCGAG 31944 | ||| ||| || |||| || ||||| ||| || || || || ||||||||||| Sbjct 20092 GTGCCGCTGCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGAG 20034 Query 31945 CCG 31947 || Sbjct 20033 TCG 20031 Score = 215 bits (238), Expect = 2e-51 Identities = 520/768 (68%), Gaps = 32/768 (4%) Strand=Plus/Minus Query 39159 TTCGTCAGAGAATTCTGGCGAATCCTCTGACCAGCCA-GAAAACGACCTTTCTGTGGTGA 39217 |||||| ||||||||| ||||||||||||| |||| | ||||| |||| | | || Sbjct 12138 TTCGTCCGAGAATTCTAACGAATCCTCTGACAAGCCTCGCAAACG-CCTTCCGGCAGTTC 12080 Query 39218 AACCGGATGCTGCAATTCAGAGCGGCAGCAAGTGGGGGACAGCAGAAGACCTGACCGCCG 39277 | | || || | ||||||||| || | |||||||| || | || ||||| | || | Sbjct 12079 GAGCAGAAGCAGGAATTCAGAGTGGAAATAAGTGGGGAACTCCTGATGACCTTAAAGCTG 12020 Query 39278 CAGAGTGGATGTTTGACATGGTGAAGACTATCGCACCATCAGCCAGAAAACCGAATTTTG 39337 | ||||||||||| || | || ||| | |||| || || |||| | | || |||| Sbjct 12019 CTGAGTGGATGTTCGATGTCGTCAAGTCAATCGAGCCTTCTGCCAAACAGCCAGCCTTTG 11960 Query 39338 CTGGGTGGGCTAACGATATCCGCCTGATGCGTGAACGTGACGGACGTAACCACCGCGACA 39397 | || ||||| ||||| || || |||||||| || ||||| || |||| ||||||| Sbjct 11959 CCGGATGGGCGAACGACATACGACTGATGCGGGAGAAAGACGGTCGGGACCATCGCGACA 11900 Query 39398 TGTGTGTGCTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGCC 39457 |||| |||||||||||||| | ||||||| |||||||| || |||||||| ||| Sbjct 11899 TGTGCAGCCTGTTCCGCTGGGCCAGTCAGGACAGCTTCTGGTGTGGCAACGTGCTTTGCC 11840 Query 39458 CGGCCAAACTCCGCGATAAGTGGACCCAACTCGAAATCAACCG-TAACAAGCAACAGGCA 39516 | ||||| || ||||| |||||| | || || | |||||| || | |||| | | || Sbjct 11839 CTGCCAAGCTTCGCGAGAAGTGGTCACAGCTGGTAATCAAGCGCGATAAAGCCA-AAACA 11781 Query 39517 GGCGTGACAGCC---AGCAAACCAAAACTCGACCTGACAAACACAGACTGGATTTACGGG 39573 | | |||||| |||| || | |||||| ||||| || |||||| | ||| Sbjct 11780 GCC---ACAGCCTCTGGCAAGCCTGCTTTGGACCTGGACAACACGGATTGGATTAAAGGG 11724 Query 39574 GTGGATCTATGAAAAACATCGCCGCACAGATGGTTAACTTTGACCGTGAGCAGATGCGTC 39633 || ||||| |||| | | | || || || | | || ||| || | | Sbjct 11723 GTAACGGTATGAGAAACGTTGTCACAGCCATCCAGAA--TCG--CGATGGCAAAT-CTTT 11669 Query 39634 GGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGCCGCAGGTAC---AGCAGGTAG 39690 | | || | ||||| | || | || ||||| ||||| | |||||| | Sbjct 11668 G---CAGCAGATGTACGCCGG-AGAGAA--AC-CAAAGCAACAGGTGCCTGAGCAGGCCG 11616 Query 39691 CGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTTTCCCGGCGAGCCTGGCTA 39750 | || ||| |||| | ||||||| ||| | || |||||||||| |||| | Sbjct 11615 CTCAAATCTTCAATGAGTTGTTCAGGCAGCTGAAGGGCGCTTTCCCGGCACTGATGGC-A 11557 Query 39751 ACCGTGA----CCAGAACGAAGTGAACGAAATCCGTCGCCAGTGGGTTCTGGCTTTTCGG 39806 | | | | ||| | || | ||||| | || ||||||||||| |||| ||| Sbjct 11556 AGCATCAAAACCCAAGAAGAGTTAAACGAGCTGCGGCGCCAGTGGGTGATGGCCTTTGCT 11497 Query 39807 GAAAACGGGATCACCACGATGGAACAGGTTAACGCAGGAATGCGCGTAGCCCGTCGGCA- 39865 |||||||| || || || || || ||||||||||| || ||| | ||||| | ||| Sbjct 11496 GAAAACGGCATTACGACAATCGACCAGGTTAACGCCGGGATGAAGATTGCCCGCCAGCAG 11437 Query 39866 GAATCGACCATTTCTGCCATCACCCGGGCAGTTTGTTGCATGGTGCCG 39913 ||| || || || || || || || || || || || || |||||||| Sbjct 11436 GAAACG-CCTTTCCTCCCGTCGCCGGGCCAATTCGTCGCCTGGTGCCG 11390 Score = 98.7 bits (108), Expect = 3e-16 Identities = 237/359 (66%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 33540 GCGGCCTTGATAGTCATATCATCTGAATCAAATATTCCTGATGTATCGATATCGGTAATT 33599 ||||||||||| ||||| || || |||||||| | || || || | || | ||| Sbjct 17310 GCGGCCTTGATTGTCATGTCGTCAGAATCAAAGAGGCCGTCAGTTTCTACGGCGATGATT 17251 Query 33600 CTTATTCCTTCGCTACCATCCATTGGAGGCCATCCTTCCTGACCATTTCCATCATTCCAG 33659 | | |||| ||||||||||| || ||||| ||||| |||||||||||||||| ||| Sbjct 17250 TTGAACCCTTGACTACCATCCATAGGGGGCCAGCCTTCTTGACCATTTCCATCATCCCAA 17191 Query 33660 TCGAACTCACACACAACACCATATGCATTTAAGTCGCTTGAAATTGCTATAAGCAGAGCA 33719 |||||| | || |||||| | || | || | | | | | | | Sbjct 17190 TCGAACAGGGAAACGGCACCATGGGTGTTGTATCCGTGCTCATATACCAACGGAATAATG 17131 Query 33720 TGTTGCGCCAGCATGATTAATACAGCATTTAATACAGAGCCGTGTTTATTGAGTCGGTAT 33779 || || ||||||||||||| || ||||| | || ||||| || ||| || ||| Sbjct 17130 TGCTGTGCCAGCATGATTAGAACGGCATTGAGAACGCTTCCGTGCTTCATGACGCGATAT 17071 Query 33780 TCAGAGTCTGACCAGAAATTATTAATCTGGTGAAGTTTTTCCTCTGTCATTACGTCATGG 33839 ||| || |||||| | ||||||| ||| | || || | | ||| ||| Sbjct 17070 TCATGATCGCTCCAGAATTCGTTAATCTCAGTCAGTGCTGAATCAGTTACGATGTCGTGG 17011 Query 33840 TCGATTTCAATTTCTATTGATGCTTTCCAGTCGTAATCAATGATGTATTTTTTGATGTT 33898 || ||||| | |||| ||| |||||||| || |||| |||| ||||| | ||| Sbjct 17010 TCAATTTCCACGGTTATTTCTGCCTTCCAGTCATAGTCAACCGTGTACTTTTTAACGTT 16952 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 46121 TGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTT 46180 ||| ||||||| || ||||| ||||||||||| || || || || ||||| |||||||| Sbjct 4116 TGATATGCAGACACGCCAGCGCGATGTTGCTGCTCTGGACGCCAAGTACACAAAGGAGTT 4057 Query 46181 AGCTGATGCTAAAGCTGAAAATGATGCTCTGC 46212 ||| ||||| ||||||||| | |||| ||| Sbjct 4056 AGCCGATGCACAAGCTGAAACTACTGCTTTGC 4025 >seq235341 Length=2087 Score = 224 bits (248), Expect = 3e-54 Identities = 661/1006 (66%), Gaps = 32/1006 (3%) Strand=Plus/Minus Query 35994 GCATAGACAATAACTACCGATGTCATATACCCATACTCTCTAATCTTGGCCAGTCGGCGC 36053 || |||||||| || || |||||||| ||||||||| |||||||||| || | | Sbjct 2019 GCGTAGACAATGACAACTGATGTCATGTACCCATACCTTCTAATCTTGCGCAATTTATCC 1960 Query 36054 GTTCTGCTTCCGATTAGAAACGTCAAGGCAGCAATCAGGATTGCAATCATGGTTCCTGCA 36113 || ||||||||| || ||| |||| || || || ||||| || |||||||| || | | Sbjct 1959 GTGTTGCTTCCGAGTAAAAATGTCATCGCGGCTATGAGGATAGCTATCATGGTGCCGGAA 1900 Query 36114 TATGATGACAATGTCGCCCCAAGACCATCTCTATGAGCTGAAAAAGAAACACCAGGAATG 36173 ||||||| | || ||||| | || |||||||| | ||||||||| ||| ||| Sbjct 1899 TATGATGCTAGCGTGGCCCCTAATCCGTCTCTATGTTGAGCAAAAGAAACTCCATGAACA 1840 Query 36174 TAGTGGCGGAAAAGGAGATAGCAAATGCTTACGATAACGTAAGGAATTATTACTATGTAA 36233 ||||| | || | ||| ||| ||| |||| || || || || | | Sbjct 1839 TAGTGTCTAAACAAATAATATAAAAATAATACAATAATATACGGGATAATGATGGTCACT 1780 Query 36234 ACACCAGGCATGATTCTGTTCCGCATAATTACTCCTGATAATTAATCCTTAACTTTGCCC 36293 | ||| | | ||| | |||||||| ||||||| |||| | || ||| Sbjct 1779 AGACCGATCGTAATTTTTTTCCGCATGTGTACTCCTATGGGCTAAT----AGCT---CCC 1727 Query 36294 ACCTGCCTTTTAAAACATTCCAGTATATCACTTTTCATTCTTGCGTAGCAATATGCCATC 36353 || || || ||| || || | ||| ||||| | | | |||||| || Sbjct 1726 ACTTGTCTGCTAAGGCAATCTAATATTCTGGGCTTCATGCGAATGAAACAATATTTGATT 1667 Query 36354 TCTTCAGCTATCTCAGCATTGGTGACCTTGTTCAGAGGCGC-TGAGAGATGGCCTTTTTC 36412 || || || || || |||||||| ||||| | | || ||| || |||||||| || Sbjct 1666 TCCTCTGCAATATCGGCATTGGTTGATTTGTTAATTGTAGCATGA-AGGTGGCCTTTCTC 1608 Query 36413 TGATAGATAATGTTCTGTTAAAATATCTCCGGCCTCATCTTTTGCCCGCAGGCTAATGTC 36472 || || || ||||||||||| | ||| || || |||| ||| | | | |||| || Sbjct 1607 AGAAAGGTAGTGTTCTGTTAATACATCACCAGCTTCATTTTTACCTCTAAAACTAACATC 1548 Query 36473 TGAAAATTGAGGTGACGGGTTAAAAATAATATCCTTGGCAACCTTTTTTATATCCCTTTT 36532 | | ||| ||| |||||| | | || |||| | | | |||||||| ||||| Sbjct 1547 AGCATATTTAGGGCTAGGGTTAGACACTATGGCCTTTGTTAGATCTTTTATATTTCTTTT 1488 Query 36533 AAATTTTGGCTTAATGACTATATCCAATGAGTCAAAAAGCTCCCCTTCAATATCTGTTGC 36592 || ||||| ||||| || ||||| | || | | ||| | |||||||| | | Sbjct 1487 CCGCTTAGGCTTTATGACGATCTCCAAGCAATCTAGCAACTCTTCATCAATATCCTTAGT 1428 Query 36593 CCCTAAGACCTTTAATATATCGCCAAATACAGGTAG-CTTGGCTTCTACCTTCACCGTTG 36651 || | || || ||| || | ||| | | ||| ||||||||||||||| || || | Sbjct 1427 TCCAAGGAGGTTCAATGCGTCTCTAAACA-AATTAGTCTTGGCTTCTACCTTAACGGTAG 1369 Query 36652 TTCGGCCGATGAAATGCATATGCATAACATC-GTCTTTGGTGGTTCCCCTCATCAGTGGC 36710 ||| |||||||||| |||| ||| ||||| |||||| | || || ||| ||||| Sbjct 1368 TTCTACCGATGAAATCCATAGTCATTACATCACTCTTTGAT-GTGTCCTGCATGAGTGGT 1310 Query 36711 TCTATCTGAACGCGCTCTCCACTGCTTAATG--ACATTCCTTTCCCGATTAAAAAATCTG 36768 || || | || ||| ||||| || |||| ||| |||| ||||| | Sbjct 1309 TCAATTACTATTTTTTCGCCATTGCTTCCTGTACCATTGTTTT--TGATT---AAATCAG 1255 Query 36769 TCAGATCGGATGTGGTCGGCCCGAAAACAGTTCTGGCAAAACCAATGGTGTCGCCTTCAA 36828 |||||| ||||| || || || | | || | | ||| |||| | ||| |||| Sbjct 1254 ACAGATCTGATGTTGTAGGGCCATACATTGTACGAGAAAACCCAACAATATCGTTATCAA 1195 Query 36829 CAAACAAAAAAGATGGGAATCCCAATGATTCGTCATCTGCGAGGCTGTTCTTAATATCTT 36888 |||| | ||| |||||||| ||||| ||||| || || || | ||||||||| || |||| Sbjct 1194 CAAAGACAAATGATGGGAAACCCAAAGATTCATCGTCGGCTAAGCTGTTCTTGATTTCTT 1135 Query 36889 C--AACTGAAGCTTTAGAGCGATTT----ATCTTCTGAACCAGACTCTTGTCATTTGTTT 36942 | |||| | | |||||| ||||| || | || | | || || || | Sbjct 1134 CTATACTGGACGT------CGATTTGTTAATCTTTTGTATCAAATTAGAATCGTTGGTCT 1081 Query 36943 TGGTAAAGAGAAAAGTTTTTCCATCGATTTTATGAATATACAAATA 36988 | || |||||||| ||||| |||| || |||||| | | ||| Sbjct 1080 TAGTGAAGAGAAAGGTTTTATCATCAATCAGGTGAATAAAAATATA 1035 >seq150516 Length=8092 Score = 147 bits (162), Expect = 7e-31 Identities = 211/293 (72%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 41369 ATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTGACAG-ATTAAA 41427 ||| | || || ||||| ||||||||| ||||||||||||||||| ||||| || || Sbjct 6561 ATGTTGAAAAAGTATGGTCATCCATACGTAGGCGGCGCGTTCTGCACAGACAGGATGAAG 6502 Query 41428 ACTCGTTCCCTTCACCAAATACTGTGATGACCATTTCGGGCGAGGGAATTACACCACGTG 41487 || || || |||| ||||||||| ||||| | | || | || || || || || Sbjct 6501 ACA-GTACCATTCATCAAATACTGCGATGAAAAATATGGAAGGGGTGGGTATACGACCTG 6443 Query 41488 GATTGGCATCAGAGCTGATGAACCGAAGCGG--CTAAAGCCAAAGCCTGGAATCAGATAT 41545 | | ||||| || ||||| || ||| | || | ||||| |||||||| ||||| Sbjct 6442 GCTGGGCATGAGGATAGATGAGCCAAAGAGAACCTCA--CCAAAACCTGGAATTAGATAC 6385 Query 41546 CTTGCTGAACTGTCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCA 41605 || || ||| | || || |||||| | ||| | ||| ||||||||| || || Sbjct 6384 CTAGCAGAAATAAGTGATTTCGAGAAGCAGGATGTAATCGAGTGGTGGAAGGGTCAGCCT 6325 Query 41606 TTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCATTAAAAA 41658 |||||| || |||| | ||| ||||| || |||||| | |||||||||||||| Sbjct 6324 TTCGATCTGGAAATCCAGGAGCATCTTGGAAACTGCGTTTTCTGCATTAAAAA 6272 >seq369136 Length=224 Score = 138 bits (152), Expect = 3e-28 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31348 TCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTC 31407 ||| |||||||| || |||||| | || || ||||||||||| | ||||||||||| Sbjct 44 TCACCGCCATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATTTTTTC 103 Query 31408 GATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCAC 31467 |||||| |||||||| || || || || | |||||| ||||| || ||||||| | Sbjct 104 GATGAATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCAACGAT 163 Query 31468 GACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAT 31526 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 164 TATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCAT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154165418631328