Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq202893 479 2e-131 seq260660 143 2e-30 seq434788 141 7e-30 seq487971 113 3e-21 seq185146 84.2 2e-12 seq144816 78.8 7e-11 >seq202893 Length=10719 Score = 479 bits (530), Expect = 2e-131 Identities = 871/1251 (70%), Gaps = 44/1251 (4%) Strand=Plus/Minus Query 4664 GGCAGCCAGTCGCCGTAGCTTTCCTCTTTCAGCGTCAGGTTGGTCTGTATCCCCTGTTTG 4723 ||||||||||| | || | || ||||| |||| ||||||| || || | ||| Sbjct 6724 GGCAGCCAGTCAGATTCGCAGACGTCACTCAGCTCCAGGCTGGTCTGAATGCCGTTTTTC 6665 Query 4724 GTATGGCGTTTCTCGTAATTCAGTC-CGTATTCCTTCAGCATCACCGGCAGCCCCAGCCC 4782 || | ||| || | | || || |||| ||||||||| || ||| | || | || Sbjct 6664 GTTTTGCGCTTAA-GCAGCTCTATCTCGTACTCCTTCAGCGTCTGCGGGATAGCCTGGCC 6606 Query 4783 GAACATTTTCAGACTGAGTACATTCCGGTAGCCGTTTGCCTCCATGTAGGCCAGATAGGC 4842 |||| ||||||| | || | | | || | | |||||| | | ||| || || Sbjct 6605 GAACGCCGTCAGACTCATGGGATGCTGATGCCCCCTGGACTCCATAAATGACAGGTACGC 6546 Query 4843 GTGATAGAGGTATT--TACGGTAATTGCGCGGGATGATACTGGCGTTCCCCATATACATG 4900 ||| || ||||| | ||| || |||| |||| |||| || || ||| ||| Sbjct 6545 GTGGTAAAGGTAGCGCTTCGGG--TTCAGCGGCCGGATATTGGCATTGCCGATAAACAGC 6488 Query 4901 CCGCT--GGTCTGCGGCAGGGTTTCCAGATAGCCGATAAAATCAAACGTCGGGTCGGCAT 4958 ||| | || ||| ||| | ||| |||||| || || | | ||||||||| | Sbjct 6487 CCGGTCGGGGTTGC--CAGCGGCATCAGGTAGCCGCAGAAGTCGACCAGCGGGTCGGCGT 6430 Query 4959 CCCGTTTGATGTTCAGTGCCTCGTCTGAGTTCTGCTGGGACTGAAGCAGTGACCGGGCGA 5018 ||||| || | ||| |||||| | ||| ||||| | | ||| | ||| | || Sbjct 6429 GGCGTTTAATCTCCAGCGCCTCGCCCGAGGTCTGCGGCGCCTGTAACAGCTTTCTTGCCT 6370 Query 5019 GCATCGGGT-CGCTGAACTTCTGCATCAGGTGACGCACGATGACCGCCAGCTCGCGGGTG 5077 | ||| | ||| | | |||||||||||| |||||||| ||||||||||| || | Sbjct 6369 CCTCCGGTTGCGCAAAGCG-CTGCATCAGGTGGCGCACGATAACCGCCAGCTCCAGGCGG 6311 Query 5078 ATTTTGTCCTTAAGCTGCGGGTCGCGCTCCTGCGGGGCTATCTGTTCCGGGAAGTGAATA 5137 ||||||||| ||||||||||||||||| | ||| ||||| | ||| | Sbjct 6310 ATTTTGTCCAGCAGCTGCGGGTCGCGCTCGTCCGG------------CGGGAGG-GAA-A 6265 Query 5138 ATCACCCGTCGGCGTGAC-ACGCCGCCGCTGCGGTCGGTGAAGCGCATCGGGTTATTGTT 5196 ||||| |||| ||| ||||| |||||||||||| |||| |||||||| |||||||| Sbjct 6264 GGGACCCGGGGGCGGGACCACGCCCCCGCTGCGGTCGCTGAAACGCATCGGATTATTGTT 6205 Query 5197 CACGGCCAGAATCACCGCCGGGATGTGCGTGGAGTACGCATCCCGGTATTTCGGGTCAAC 5256 ||| ||||| ||||||||||| || | | ||||| ||||| ||||| || ||||||| Sbjct 6204 CACCGCCAGTATCACCGCCGGAATATAGGCCGAGTAGGCATCACGGTACTTGGGGTCAAT 6145 Query 5257 GGACACCGCATCGCCGCCGGTGATGGCCTTGAGTCCGGCACCGTCGCCGCTCCATTTTTC 5316 |||||| ||||||||||| |||||||| | || ||||||||||||||||| || || Sbjct 6144 CACCACCGCGTCGCCGCCGGTAATGGCCTTAATGCCCGCACCGTCGCCGCTCCACTTCTC 6085 Query 5317 CTGGTCCGGCAGGCGTATCAGTGAGAAGCCAGTTAACGC-GGCACGTTCACGCGGGGATT 5375 ||||| |||||| || | || |||| | |||| ||| ||||||||||| || | Sbjct 6084 TTGGTCAGGCAGGGTGATAAACGAATAGCC-GACCACGCTGGCGCGTTCACGCGGCGACT 6026 Query 5376 CCAGCGTCTCGATGGTGGCCGACGTGGCGTTATCCTCCCCGGCCAGCAGGGTGGCTATTT 5435 ||| ||| || ||| ||||||| |||| ||| |||| |||||||||||| ||| | |||| Sbjct 6025 CCAACGTTTCAATGCTGGCCGAGGTGGTGTTGTCCTTCCCGGCCAGCAGCGTGCCGATTT 5966 Query 5436 CGGCCATGATACTTTTGCCGCTGCCGCCGGGACCGGTCACCTCCAGAAAGAGCTGCCAGT 5495 | ||||| || ||||| |||||||||||||| ||||| ||||||||||| | |||||||| Sbjct 5965 CCGCCATCATGCTTTTCCCGCTGCCGCCGGGGCCGGTGACCTCCAGAAACATCTGCCAGT 5906 Query 5496 CGTAGCGGTTTGCCAGCACCATAAACAGTGCAGCCAGAATCACGTCGCGTTTTTCCGCAC 5555 ||||||||||||||||||||||||| || || || || || || | || || Sbjct 5905 CGTAGCGGTTTGCCAGCACCATAAAGAGCGCCGCGAGGATGCGCTCCTGCTTGTCGTGGT 5846 Query 5556 GGCCACCGGCGGCACG-GTCAAGCCAGCGCCAGAAGGCGGGGGCGTGGGTTTCCAGCGTT 5614 | |||||||| || ||| ||||| ||||||| || ||||| | | || || Sbjct 5845 TCCGTCCGGCGGCCCGCGTC-AGCCACTTCCAGAAGTTCGGCGCGTGTTCTGCAAGGCTT 5787 Query 5615 TCACCGTCCACCGGCGGGGTGAAATCCACATCGCACAGGGTGCGCATCCAGTGTGACGGA 5674 || || | ||| | |||| | ||| || | ||||| ||||| | | Sbjct 5786 TCGCCCGGCTTCGGTGCGGTGTAGCTCACGCTATTCACCGAGCGCAGCCAGTTCTCCCGG 5727 Query 5675 CTGTGCGGGTGGAACGTGCCGTTCTGCGTGTCGAGCACGCCGTTACGAAAGCCAATCAGG 5734 |||||||| ||| |||||| | || || ||| ||||| ||||||||||||||| Sbjct 5726 TTGTGCGGGCTGAAGGTGCCGATGGCGGTTTCATACACCCCGTTGCGAAAGCCAATCAGG 5667 Query 5735 CGGCGGGAGGGGGCTTCCTGCTGCGGAATAATCAGCTTCAGGGTATCCACCACGGAGGCC 5794 || || | ||| | || |||||| | || || |||||||| |||| | | | Sbjct 5666 CGACGAGCCGGGTCGCCCATCTGCGGCACCATAAGTTTCAGGGTGTCCA-GATGCTGTTA 5608 Query 5795 ACCTTCCCGG---AGGAGAACGGCGCACGCAGACG--CTGAAACAGCCCGGCCACATCCC 5849 | |||||| |||||| || | ||| | || ||| |||||| |||| | |||| Sbjct 5607 A---TCCCGGCGACGGAGAATGGGG--CGCGGGCGGTCTGGAACAGCGCGGCAATCTCCC 5553 Query 5850 GG-GCAAAGTCCTGTGGCGGCAGCACCTTCCAGACACCATTTTCATAGCGG 5899 || ||| || ||| | |||| ||| ||| | || || ||||||||| Sbjct 5552 GGCGCAGCGT-CTGCTGGGGCACGACCAGCCATGCGCCGTTCTCATAGCGG 5503 >seq260660 Length=17175 Score = 143 bits (158), Expect = 2e-30 Identities = 349/521 (67%), Gaps = 16/521 (3%) Strand=Plus/Minus Query 2715 ATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTATGGAT 2774 |||||||||||||||||||| ||| || | ||||| ||||||||||| | |||| || Sbjct 1948 ATAATCAGCCCACCACTGCAACATCAACCTACGCTCGTCCAAATGCTCAGCTTTATGAAT 1889 Query 2775 ATATGCCGCACGTACATTATTACGCT-CTGAGTGGCTCAGTTGCCTCTCTATCGCGTCAT 2833 ||||| ||||| || || |||| |||| ||||||| |||||||| | | ||| Sbjct 1888 GTATGCGGCACGAACGGAGTTCCGCTCCTGA-TGGCTCATCTGCCTCTCAA---CAGCAT 1833 Query 2834 CACTCCATAAC---CCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGCC 2890 | ||| | || || ||||| ||| |||| || ||||| | ||||| ||||||| Sbjct 1832 CTCTCGACCACTTTCCTGACTCGATCAAAGCACTACAAGCCATCGCTCTAAAGCCATGCC 1773 Query 2891 CACACACCT---CGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGT 2947 |||| |||| ||||| || ||||| ||||||| | | || |||| || |||| Sbjct 1772 CACATACCTCAACGGTT---GTGTCATAACCCATCGACCTGAGCGCCTTGTTCACTGTGT 1716 Query 2948 TTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTATCACCAC 3007 |||| |||||| || | |||||||| || || | || || ||||| | Sbjct 1715 TTTCGCTCATAGGTTTTCTGAAATCATGATCGCCAATGAATACAAGGTCGCATTCACCGC 1656 Query 3008 TAATCTGCTTTAACTGGTTTAATAAAATC-ATCGCCTGTCGACTAAGCGGAACGATATGT 3066 | || | || | | | ||| | || || | ||||| ||||| | ||| |||| ||| Sbjct 1655 TGAT-TTCTCTGATGGTTTTTAGAAGTTCTAAAGCCTGACGACTTAACGGCACGAGGTGT 1597 Query 3067 TCCTCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCTTTAATTTCTTCTCGCTTT 3126 ||||| || ||||| | |||| || ||| | | || || | | Sbjct 1596 GGGGTCTTCATTTTTGAACCTCGATGGGAATGTTTGACTCCTAGCAATGGCTCGCGTTCT 1537 Query 3127 GCAGGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCCCAACGTGCGAAACGTAAT 3186 |||| ||| ||| | | || || ||||||| || ||| | |||||| || | | Sbjct 1536 CCAGGGATAGTCCACATCGCATTTTCAAAGTCGATCTCCGACCATCTTGCGAATCGAAGT 1477 Query 3187 TCACTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGC 3227 ||||||||||| | |||| | ||||| | ||||| || || Sbjct 1476 TCACTGGAACGGATAAAAATGAGCAATGTCAGCTTTACGGC 1436 >seq434788 Length=274 Score = 141 bits (156), Expect = 7e-30 Identities = 157/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 8300 TGCGCGACGGACAGCCGCAAACACAAAGACAAATTCAGGGTGTGAGGGGGTAAGGGTT-- 8357 || |||||| || || ||||| | |||| ||||| ||||| | || ||||| Sbjct 1 TGAGCGACGAACGGCTGCAAAGATAAAGGTGAATTCGGGGTGAGCGG---TAAGGTGAAC 57 Query 8358 -GTAGCCATGATGGCAGCCTCCTGTGAATAGCAAATAACGCTATCGCCGGAGTTCTCACG 8416 |||||||||||||||| |||| ||| |||| |||||| | | ||||||||| || Sbjct 58 CGTAGCCATGATGGCAGTCTCCATTGAGTAGCGGTTAACGCCACCACCGGAGTTCCTACA 117 Query 8417 CTCGATGGCGATAGCCCAGACGGGGGTGAGAATACCGGCTTCACAGGATACCGGCCAGCC 8476 ||| || | |||||| ||||||||| |||||||||| ||| | | ||||||||||| Sbjct 118 CTCATGGGTGGTAGCCCGGACGGGGGTAGGAATACCGGCCTCAATGAACACCGGCCAGCC 177 Query 8477 CGGAGGCTGCCCCGCCTGAGCTACCATT 8504 || ||||||||||||| | || |||||| Sbjct 178 CGAAGGCTGCCCCGCCCGGGCCACCATT 205 >seq487971 Length=618 Score = 113 bits (124), Expect = 3e-21 Identities = 207/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 2698 TTACGGTTCATATCCAAATAATCAGCCCACCACTGCATCATTAAACGC----CGCTCATC 2753 || ||| |||||||| |||||| | |||||| |||||||| ||| || |||| Sbjct 102 TTCCGGCACATATCCAGATAATCCGACCACCATTGCATCAT----CGCTTTACGGGCATC 157 Query 2754 CAAATGCTCGGAGGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAG 2813 | || || | ||||||| || ||||| || || | |||||||| ||| |||| Sbjct 158 GAGATATTCTGCTTTATGGATGTAAGCCGCTCGAACGCTGTTACGCTCCTGGTGACTCAT 217 Query 2814 TTGCCTCTCTATCGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCAT 2873 |||| || | ||| || | ||||| || |||||| || |||| || ||||| Sbjct 218 CTGCCGTTCAACCGCATCCTGTGCCCATAGGCCAGACTCCATCAGGGCACTACAGGCCAT 277 Query 2874 AGTCCTAAACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGC 2933 | || || || || || || | || |||| || ||||| |||||| |||| ||| Sbjct 278 TGCCCGTAATCCGTGACCGCAGATTTCATTTTTTGTGTCATAACCCATCAGGCGCAGTGC 337 Query 2934 GCTGTTTACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAG 2993 |||| ||||||||||| | ||| ||| | | |||||| |||||||| | ||| Sbjct 338 CTTGTTGACCGTGTTTTCGCACATCGGTTTATACGGATTATGATCACCCGGAAATACCAG 397 Query 2994 CTC 2996 ||| Sbjct 398 CTC 400 >seq185146 Length=13167 Score = 84.2 bits (92), Expect = 2e-12 Identities = 211/317 (67%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 2717 AATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTATGGAT-A 2775 |||||||| |||| |||| ||| | | || ||||| | ||| || | | || || | Sbjct 2303 AATCAGCCTACCATTGCAACATCAGTCTGCGTTCATCAAGATGTTCCGCTTTGTGAATTA 2244 Query 2776 TATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGCGTCATCA 2835 || || || || ||| ||||| || || |||| ||||| ||| | || ||| Sbjct 2243 TAAGCAGCCCGGACAGAGTTACGTTCCATATGACTCATTTGCCGCTCCACAGC---ATCC 2187 Query 2836 CT---CCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGCCCA 2892 || |||||| || || || ||| | || || ||||| || || || ||||| ||| Sbjct 2186 CTTGACCATAATCCTGATTCAATCAATGAACTACAGGCCATCGTTCTGAAACCATGGCCA 2127 Query 2893 CACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTTTTCA 2952 || || || | || ||||| ||||| | | || | |||| |||||||||||| Sbjct 2126 CAGACTTCAACCTGTGTGTCATACCCCATAACTTGTAAAGACTTGTTAACCGTGTTTTCA 2067 Query 2953 CTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTATCACCACTAATC 3012 ||||| |||| | || |||||| || ||| | ||| || | | | |||||| Sbjct 2066 CTCATCGGCTTACGAGGGTTATGATCACCAATAAAGATCAGTTCATGACCGTCACTAAGA 2007 Query 3013 TGCTTTAACTGGTTTAA 3029 ||||| ||| ||| || Sbjct 2006 AGCTTT-ACTTGTTCAA 1991 >seq144816 Length=6237 Score = 78.8 bits (86), Expect = 7e-11 Identities = 97/131 (74%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 8830 CAGCCAGGCCACATTTTTACCGCCAAGACTCACCTGCGGCGGAAATTCCCCCTTACGGAT 8889 || |||||| ||||||||||||||||| | ||||| || || | | || | ||| Sbjct 285 CAACCAGGCGACATTTTTACCGCCAAGCGAAATCTGCGAGGGGAACTGCTCCCGGCTGAT 344 Query 8890 GAGTTCGTAGATGGTCGAGCGTGACAGGCCGCACAGGTGC--ATCACTTCCGGCACACGT 8947 | ||||| |||||||| |||||||| ||| ||||||| || |||||||||| || Sbjct 345 TAAATCGTAAATGGTCGAACGTGACAGACCG--CAGGTGCTGATGACTTCCGGCAGGCGC 402 Query 8948 AAAAAACGCTC 8958 | ||| || || Sbjct 403 ATAAAGCGGTC 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36873340973872