Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq159964 123 5e-24 seq223569 111 3e-20 seq119848 109 1e-19 seq30176 96.9 7e-16 seq239679 93.3 9e-15 seq453554 86.0 1e-12 seq155840 86.0 1e-12 seq71472 80.6 5e-11 >seq159964 Length=5345 Score = 123 bits (136), Expect = 5e-24 Identities = 392/603 (65%), Gaps = 20/603 (3%) Strand=Plus/Plus Query 12526 CCGCCTTTTAGTGCATCTTCAATCGTCACCACATAACGCCACTGACCATCGGGACAAAGT 12585 ||||| || | || ||||||| || | || ||||||||||| ||||| ||||| || Sbjct 472 CCGCCCTTGATCGCGTCTTCAAGGGTAATGACGTAACGCCACTGGCCATCTGGACACAGC 531 Query 12586 CGCCCACCGTCACGCAATTCTGCAAAAGTT-GGGAATG--------GCACG-TTTTTGCG 12635 ||||| |||||||||| ||| || || || ||||| | ||||| ||||||| Sbjct 532 CGCCCGCCGTCACGCAGTTC-GCTGAATTTCGGGAAGGTGGTCGCCGCACGCTTTTTGCT 590 Query 12636 TTTAGGGTCGCCATCTCGCCAGTTGTCGCCACTCCAAAAAGAATAGGATTCATGAAATTT 12695 | || | || ||| | || || |||| || | ||||| | || ||| Sbjct 591 ------GCCG--AGCTT-CCACTCTTCCCCGGTCCAGAACGGATAGGCCTGGTGGGTTTT 641 Query 12696 GGAAGAGGGCGTGCTGAAATAGGTCTCACGCCATTTTTCATGTGTTGCCATGGCTGATGC 12755 || || |||||| || || || |||||||| || || || |||||||| || Sbjct 642 GGCCGATGGCGTGGAAAAGTACGTGGTGCGCCATTTATCGTGCGTGGCCATGGCGCTGGC 701 Query 12756 CACATCATCGAATCGCTGAAAGTCACGAATCCACGCATATTCATCGCCGTACACATGGCC 12815 ||| || | | || ||||| | | ||| ||||||||||| ||||| ||| || Sbjct 702 CACTTCGTTCAGGCGTGCAAAGTTCGGCACCCAGAAATATTCATCGCAGTACAGATGCCC 761 Query 12816 ACTATTCCCTTGTGACGTATTTTTGTTGGTCGATAAAAAATGCAGTTCCGCGCCATTGCT 12875 || | || | || |||||||| || || | || |||||||||| || ||||| Sbjct 762 GCTGTAGGACTGCGCGGTGTTTTTGTTAGTGGACAGGAAGCGCAGTTCCGCACCGTTGCT 821 Query 12876 TAAAATAATTGGGTTGCCAGTCAGCTCAACACCGAAATATTCCCTCGCCATCTTCACGAT 12935 | || || || || |||||| | || ||||| | | ||| || ||||| || Sbjct 822 CAGCCGGATAGGATTACCCGTCAGCGTGATGCCAAAATACTGCTCCGCGATGTTCACAAT 881 Query 12936 GTAATTTTTAAAGATTTCTGCTTGTCGCTTACTAGCTGATAAGAATATTTGATTGTCGCC 12995 ||| || | || || || |||||| || || | || || || |||||| Sbjct 882 GTACGAGCGGAACACCTCCGCCTGCGCCTTACTCGCAGAAAGAAAAATCTGCGGGTCGCC 941 Query 12996 GCTAAAAATTGCATCTTCCAACGCTTCAAAACTGAAATAATAAGTTGCCCCAATTTGGCG 13055 | | | |||| || ||||||||||| ||||| | || || || || ||||| Sbjct 942 CGTCAGTACGGCATTCTCAAACGCTTCAAACGCAAAATACCAGGTGGCACCGATCTGGCG 1001 Query 13056 CGATTTCAGAATATTGCGCACATCGTGGTGCTTGTTAGAGCGGATGTGTTTTTGATAATC 13115 ||| || || |||||||| | ||| |||| ||| | |||||| ||||| | Sbjct 1002 GCTTTTGAGGATGTTGCGCACCTGTTGGCCAATGTTGAGGCGCAGGTGTTTCTGATAGCC 1061 Query 13116 AAA 13118 ||| Sbjct 1062 AAA 1064 >seq223569 Length=13158 Score = 111 bits (122), Expect = 3e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 354 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 413 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 12635 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 12694 Query 414 CGACTGAGCTAACGACCCAAT 434 | |||||||||||||||| || Sbjct 12695 CAACTGAGCTAACGACCCGAT 12715 >seq119848 Length=1010 Score = 109 bits (120), Expect = 1e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 354 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 413 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 481 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 540 Query 414 CGACTGAGCTAACGACCC 431 | |||||||||||||||| Sbjct 541 CAACTGAGCTAACGACCC 558 >seq30176 Length=2762 Score = 96.9 bits (106), Expect = 7e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 359 TGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGACT 418 ||||||||| |||||| |||||| ||||||| ||||||||||| |||||||||| ||| Sbjct 2047 TGGGTCGTGCAGGATTTGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACT 2106 Query 419 GAGCTAACGACCC 431 ||||||||||||| Sbjct 2107 GAGCTAACGACCC 2119 >seq239679 Length=8567 Score = 93.3 bits (102), Expect = 9e-15 Identities = 208/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 759 AAGTGCGCATAACGCATCGTCATTTCGATAGTTGAATGTCCGAGAATTTCTTTCAATACC 818 ||||| || ||| ||| ||||| ||| || || || || ||||| || | || Sbjct 6076 AAGTGAGCGTAAATCATGGTCATGGTGATTTCAGAGTGACCCAGTATTTCCTTGAGCACA 6017 Query 819 AAAATATTCCCACCGTTCATCATAAAATGGCTGGCGAATGTATGGCGCAAAACGTGGGTA 878 | |||||| || |||||||||||||||||||| || || || || || || || |||||| Sbjct 6016 AGAATATTGCCGCCGTTCATCATAAAATGGCTTGCAAAAGTGTGTCGTAATACATGGGTA 5957 Query 879 AGTTGCCCTTTCGGCAATTCAATTTCGGC---ACGTAAAACGGCATTCTCAAAGGATTCG 935 | || ||| || |||||||| | || || || | ||| | ||| | || Sbjct 5956 AACTGATTTTTTGGTAATTCAATGCCTGCCATTTTTATTACTG-ATT-TGAAACGCTT-A 5900 Query 936 TAAGCGTCATTGAATAATCTGCCACGCTTTTTCGGTAGCATATCGAACAATTCTTTACTG 995 ||| | | | ||||| | || ||||||| || | ||||| | | |||||| Sbjct 5899 TAAACATTAGAAAATAACCGACCTTGCTTTTTTGGGATGCTATCGTAAAGTTCTTTTGAT 5840 Query 996 ATCGGCACGGTCCTATTTTTCTTTGATTTTGTATTTGTAAAGGTGATTTTATATGGCATA 1055 || || ||||||| |||||| ||| || |||||||| || ||||| | ||| || Sbjct 5839 ATAGGAACGGTCCGATTTTTACCACTTTTGGTTTTTGTAAAAGTAATTTTGTGTGGTATG 5780 Query 1056 ACTTGTGA 1063 | ||| || Sbjct 5779 AGTTGAGA 5772 >seq453554 Length=307 Score = 86.0 bits (94), Expect = 1e-12 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 10938 CCTGCAGGAAAACGGTGTGCGGTTAAAACATCTTGTGCCGAAATATTTTTAATGTTGGCA 10997 ||||| || || ||||| ||| | | || || ||||| || || || | ||| ||| Sbjct 296 CCTGCCGGGAAGCGGTGCGCGTTGAGCACGTCCTGTGCGCTGATGTTCTTCACGTTCGCA 237 Query 10998 AATTCATCTTTTGTTCCAGTATCGCCAATCGGAATCACTTTTAACCCGTCAGGATGACCG 11057 |||||||| || | ||| |||| || ||| || | || | | |||||| | ||| Sbjct 236 AATTCATCCTTCGCGCCAATATCACCCATCTCGATAAACTTCACCGCGTCAGCGTCACCA 177 Query 11058 CCAGCAATATTTACAAACATAGAGCGGAAATTTCCCACGCCTTTAGATTCGCT-GATCTT 11116 || | |||||| || | |||| || ||| || || | || || | || ||| | || Sbjct 176 CCCGGAATATTCACCAGGATAGTGCTGAAGTTGCCGATCCCCTT-GCTTTGCTCCAGCTG 118 Query 11117 TCTTGCTATCTCTTCTTCCATTTCTTCGGTTAAATCGGGATCTGTGGAGTACAAAATAAA 11176 | | | ||||||||||||| ||| || || | | || || | ||||| || Sbjct 117 ACGTCCAATCTCTTCTTCCACTTCGTCCGTCATGGCCGGGTCGCGCGTGTACAGGATGCC 58 Query 11177 GCCCATGTGTGCCCCGTTGCTGAAATAGCGACGGCGAAA 11215 |||| ||||||| |||||| | | ||||| ||||| || Sbjct 57 GCCCGTGTGTGCGCCGTTGTGGTAGTAGCGGCGGCGGAA 19 >seq155840 Length=13837 Score = 86.0 bits (94), Expect = 1e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 753 GGGGCGAAGTGCGCATAACGCATCGTCATTTCGATAGTTGAATGTCCGAGAATTTCTTTC 812 || |||||||| ||||| | ||| ||||||| ||| ||| || || |||| || Sbjct 11010 GGTGCGAAGTGGGCATATCTCATAGTCATTTTTATATCACTATGGCCTAGTATTTTTTGG 10951 Query 813 AATACCAAAATATTCCCACCGTTCATCATAAAATGGCTGGCGAATGTATGGCGCAAAACG 872 | || | ||| || || || ||||||||||| ||||| || ||||| || || | ||| Sbjct 10950 AGGACTAGAATGTTGCCTCCATTCATCATAAAGTGGCTTGCAAATGTGTGCCGGAGTACG 10891 Query 873 TGGGTAAGTTGCCCT 887 || |||||||||||| Sbjct 10890 TGAGTAAGTTGCCCT 10876 >seq71472 Length=1850 Score = 80.6 bits (88), Expect = 5e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 |||||||| || ||||||||||||||| |||| | |||||| |||| |||||||||| Sbjct 1333 TTGGTGGGCTGTCAAGGATTCGAACCTTGGACCTATTGATTAAGAGTCAACTGCTCTACC 1274 Query 415 GACTGAGCTAAC 426 ||||||||||| Sbjct 1273 AACTGAGCTAAC 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102801333647834