Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq248802 796 0.0 seq129892 491 1e-134 >seq248802 Length=12257 Score = 796 bits (882), Expect = 0.0 Identities = 1246/1762 (71%), Gaps = 63/1762 (4%) Strand=Plus/Plus Query 17624 CTCACCCATTAACCACGGAGT-TAA-ACGGATGAGTGACTATCATCACGGCGTGCAGGTG 17681 ||||||| ||||||||||| ||| | |||| | | ||||| |||||||| | || Sbjct 2044 CTCACCCC--AACCACGGAGTGTAATAAAGATGGCTAATTATCACCACGGCGTACGCGTC 2101 Query 17682 CTGGAGATTAACGAGGGCACCCGCGTCATTTCCACCGTATCCACGGCCATTGTCGGCATG 17741 | || || || || || |||||| |||||||| |||||||| | |||||||||||| Sbjct 2102 GTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTATCCACCTCTATTGTCGGCATG 2161 Query 17742 GTCTGCACGGCCAGCG-ATGCAGATGCGGAAACC---TTCCCCCTCAATAAACCTGTGCT 17797 |||||||| || |||| |||| ||||| ||| ||||| ||||| | || ||||| Sbjct 2162 GTCTGCACTGC-AGCGGATGCTGATGCC---ACCGTATTCCCGCTCAACACGCCGGTGCT 2217 Query 17798 GATTACCAATGTGCAGAGCGCAATTTCAAAGGCCGGTAAAAAAGGCACGCTGGCGGCATC 17857 ||||||| | |||||| || | || |||||| | |||||||||||| | | Sbjct 2218 GATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGCGGCACGCTGGCGAAAGC 2277 Query 17858 GTTGCAGGCCATCGCTGACCAGTCAAAACCGGTCACCGTTGTCATGCGCGTGGAAGACGG 17917 | ||||||| || || |||||| || ||||| || || || ||||||| || || || Sbjct 2278 GCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACGGTGGTGGTGCGCGTTGAGGAGGG 2337 Query 17918 CACCGGTGATGACGAGGAAACGAAACTCGCGCAGACCGTTTCCAATATCATCGGCACCAC 17977 ||| || ||| || | | | ||| ||||||||||||| || Sbjct 2338 ---------TGAAGACGAAGCGGCAACCAC-CAG--------CAATATCATCGGCGGCAG 2379 Query 17978 CGATGAAAACGGTCAGTACACCGGACTAAAAGCCATGCTGGCGGCGGAGTCGGTAACC-- 18035 ||||| ||||| | |||||||| | ||||| |||| |||||| || | | ||| Sbjct 2380 CGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCG--ACCTT 2437 Query 18036 GGTGTTAAACCGCGTATTCTCGGCGTGCCGGGACTGGATACCAAAGAGGTGGCTGTTGCA 18095 || ||||| ||||||||||||||||||||||| |||||| | || ||||| || Sbjct 2438 GGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGCG 2497 Query 18096 CTGGCATCAGTCTGTCAGAAGCTGCGTGCTTTCGGGTATATCAGCGCATGGGGCTGTAAA 18155 ||||| || |||| ||| ||||||| || ||||| |||||| || | ||||||||| Sbjct 2498 CTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTACGGCTGTAAA 2557 Query 18156 ACCATTTCCGAGGTGA--AAGCCTATCGTCAGAATTTCAGCCAGCGTGAGCTGATGGTCA 18213 || | ||| | | ||| ||||| | || ||||||||||| ||||||||||| | Sbjct 2558 ACGGTAAGCGATGCGCTCAAG--TATCGCGAAAACTTCAGCCAGCGCGAGCTGATGGTGA 2615 Query 18214 TCTGGCCGGATTTCCTCGCATGGGATACGGTCACCAGTACCACCGCCACCGCGTATGCCA 18273 ||||||| || || |||| ||| | || || ||||| | | | || || ||||||| Sbjct 2616 TCTGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGAAACTGCCTATGCCA 2675 Query 18274 CCGCCCGTGCGCTGGGGCTGCGCGCTAAAATCGACCAGGAGCAG-GGCTGGCATAAAACG 18332 ||||||| || || || |||||||| |||||||| | || ||| |||||||||||||| Sbjct 2676 CCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGA-CAGCGGCTGGCATAAAACC 2734 Query 18333 CTGTCCAATGTCGGGGTGAACGGTGTTACCGGCATCAGCGCATCTGTATTCTGGGATTTG 18392 ||||| || ||||| || ||||| || |||||| | ||| || ||||||||||| || Sbjct 2735 CTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTCCGCCTCGGTATTCTGGGACCTG 2794 Query 18393 CAGGAGTCCGGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACTACGCTGATTCGC 18452 ||| || || |||||||| || ||||| || || | ||||||| |||||||| ||| Sbjct 2795 CAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAAGCCAGCGTCACCACGCTGATCCGC 2854 Query 18453 CGCGACGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTT 18512 |||||||||||||||||||| ||||| ||||| ||||||||||||||| |||| Sbjct 2855 AAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGCTGTTCGCCTTT 2914 Query 18513 GAAAACTACACCCGCACCGCGCAGGTCGTGGCCGACACGATGGCTGAGGCGCACATGTGG 18572 ||||||| ||||||| | |||||||| | |||||||| ||||| || ||||| |||||| Sbjct 2915 GAAAACTTCACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATGCGCATATGTGG 2974 Query 18573 GCGGTGGACAAGCCCATCACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCC 18632 || |||||||| | || | |||||| | |||||||| | | ||| ||||| ||| Sbjct 2975 GCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCGGGATCAACGCC 3034 Query 18633 AAATTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAA 18692 || ||||||||||||| | ||| ||| | ||| || | |||||||| | |||| Sbjct 3035 AAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCCAACTGCTGGTACGACGAA 3094 Query 18693 GAATCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACA 18752 ||||| ||| | ||| || ||||| || ||||||||||||||||||||||| Sbjct 3095 AGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACTACGACTATACC 3154 Query 18753 CCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGATAAATACCTGGCA 18812 |||||||| || || ||| | ||||||||||| ||||| |||||||| | |||||||| Sbjct 3155 CCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACAGCTACCTGGCG 3214 Query 18813 AATCTGGTCACCTCGGTTAACAGCAATTAAGGAGCCTGACCGATGGCAATGCCGCGCAAA 18872 || | | | | || || |||||| ||||||| | |||||| |||| ||| Sbjct 3215 AACTTCGCCGCTTCTGTGAACAGC---TAAGGAGAAACCCTCATGGCACTGCCTAAGAAA 3271 Query 18873 CTCAAGTTAATGAACGTCTTTCTGAACGGCTACAGCTATCAGGGCGTTGCAAAGTCCGTC 18932 || || | |||| | ||| | | | ||||||||||||| || | | || | Sbjct 3272 CTGAAATACCTGAATTTGTTTAACGATGCCAACAGCTATCAGGGTGTGGTGACCTCACTG 3331 Query 18933 ACGCTGCCAAAACTGACCCGTAAGCTCGAAAACTATCGCGGTGCGGGGATGAACGGCAGC 18992 |||||||| || ||| | || |||||||| || ||||| | || ||||||||| Sbjct 3332 ACGCTGCCGAAGCTGGCGCGCAAGCTCGACCCTTACCGCGGCGGCGGCATGAACGGCGTG 3391 Query 18993 GCACCGGTAGACCTCGGCCTTGATGACGATGCGCTGTCAATGGAGTGGTCGCTCGGTGGC 19052 || | | || ||||| || || ||||||||| |||||||| | || ||| Sbjct 3392 GCGCATATCGATAATGGCCTGGAAGATGATGCGCTGGATCTGGAGTGGACCATCTCCGGC 3451 Query 19053 TTCCCGGATTCGGTTATCTGGGAGCTTTACGCCGCAACCGGTGTGGATGCC---GTGCCG 19109 || || || | | | ||| || | || |||| ||| |||||| Sbjct 3452 CTC---GA--CG----ACCGCGTGCT-----GAGCCAGTGGGGTGG-CGCCACGGTGCCG 3496 Query 19110 ATTCGTTTTGCAGGCTCTTACCAGCGCGACGATACCGGCGAAACGGTGGCCGTCGAAGTG 19169 | || ||| || || |||||||| ||||| |||| ||| || | || || || ||| Sbjct 3497 CTGCGCTTTATGGGTTCCTACCAGCGTGACGACACCGACGAGACCATCGCGGTGGAGGTG 3556 Query 19170 GTCATGCGTGGACGTCAGAAAGAAATCGACACCGGCGAGGGTAAACAGGGAGAAGACACT 19229 | |||| || || | | ||||| ||||||| | || ||||| || || | Sbjct 3557 GAGCTGCGCGGCAAGCATCAGCAGTTCGACTTCGGCGAGAGCAAGCAGGGTGAGGAGAAC 3616 Query 19230 GAGTCGAAAATCTCCGTGGTCTGCACCTATTTCCGGCTGACGATGG-ACGGTAAGGAGCT 19288 || | |||||| || |||||||| | | ||||| | ||| |||| || | ||| Sbjct 3617 GAAACCAAAATCACCACCAAATGCACCTACTACAAGCTGA-GCTGGAACGGCAAAGCGCT 3675 Query 19289 GGTCGAAATTGACACCATCAACATGATTGAGAAGGTGAACGGCGTCGATCGGCTGGAGCA 19348 | | || || |||||| |||||||| | |||| ||||||||| |||| || |||| | Sbjct 3676 GATTGAGATCGACACCGTCAACATGGTCGAGATCGTGAACGGCATCGACCGCCTGGCCGA 3735 Query 19349 ACACCGCCGCAATATCGGCCTG 19370 ||||| || ||||||||| Sbjct 3736 GCACCGTAAGAACATCGGCCTG 3757 >seq129892 Length=23088 Score = 491 bits (544), Expect = 1e-134 Identities = 1134/1691 (67%), Gaps = 47/1691 (3%) Strand=Plus/Minus Query 10988 ACTGACCTTGAGCATATCAGCCAGAGTATCGGCGATATCCTGCGCACACCGGTCGGCTCA 11047 ||||| | || |||||| ||||| | |||| ||||||| || ||| ||||| Sbjct 1726 ACTGATATCGACCATATCCGCCAGTCGGTGCGCGACATCCTGCTGACCCCGCAGGGCTCG 1667 Query 11048 CGGGTGATGCGTCGTGATTACGGCTCGTTGCTGGCGTCAATGATTGACCAGCCGCAGACC 11107 ||||||||||| ||||| ||||||||| ||||| || | || | ||||||||||||| | Sbjct 1666 CGGGTGATGCGCCGTGACTACGGCTCGCTGCTGTCGGCGCTGCTCGACCAGCCGCAGAAC 1607 Query 11108 CCGGCGCTTGAGTTGCAGATTAAAGTCG-CCTGTTACATGGCAGTGCTGAAATGGGAACC 11166 | |||| ||||||||| |||| |||| |||||||| ||||| ||||| || Sbjct 1606 GAGACGCTGCGCCTGCAGATTAT-GTCGGCCTGCTACATGGCGCTGCTGCGCTGGGAGCC 1548 Query 11167 CCGCGTCACCCTGT----CATCCGTCACCACGGCGCGCAGTTTTGACGGGCGAATGACGG 11222 ||| |||| || |||||| | || || | |||||||| | ||| || Sbjct 1547 GCGCATCACGCTCGACAGCATCCGCTATCA----GCCGGGGTTTGACGGCAGCATGGAGG 1492 Query 11223 TCACGTTAACCGGCCAGCACAACGACACCGGCCAGCCACTTTCATTAACCATCCCTGTGA 11282 | || ||| |||| | |||| | | ||| || |||| || |||| || |||| Sbjct 1491 TAGCGCTAAGCGGCACCCGCAACCA----GTCCA--CATTTTCCCTATCCATTCCAGTGA 1438 Query 11283 GTTGAAACC-ATGCCGATTATCGACCTGAACCAGCTACCCGCACCGGATGTGGTCGAGGA 11341 ||| | ||| ||| | | || || | | ||| ||||||| ||| | | ||||| | Sbjct 1437 GTTAACACCTATGGCCACGATTGATTTAAGTCAGTTACCCGCGCCGAACATCGTCGAAGC 1378 Query 11342 GCTGGACTTTGAAAGCATTCTCGCTGAA-CGCAAG-GCGACACTGATTTCCCTTTA---- 11395 |||||| ||||| | | | | || | | ||||| ||| | |||||| | | || Sbjct 1377 GCTGGATTTTGAGACCCTGTT-GCAGCAGCGCAAAAGCG-CGCTGATTGCGCGCTATCTC 1320 Query 11396 -------CCCGGAAGATCAGCAGGAGGCGGTCGCCCGTACCCTGACACTGGAATCTGAGC 11448 ||| | ||| ||||||||||| | ||||| ||| | || |||| || |||| Sbjct 1319 CCCCCCCCCCCGCCGATAAGCAGGAGGCGATAGCCCGCACCTTAACCCTGGCGTCGGAGC 1260 Query 11449 CTCTCGTCAAACTGCTGGAAGAAAATGCTTATCGTGAGCTTATCTGGCGTCAGCGTGTGA 11508 | ||||||| |||||||| || || || || || ||| | ||| ||| ||||| | | Sbjct 1259 CGATCGTCAAGCTGCTGGAGGAGAACGCCTACCGCGAGGTGATCCTGCGCCAGCGCATTA 1200 Query 11509 ATGAGGCCGCACGGGCGGTGATGCTGGCCTGTGCCGCCGGTAATGACCTTGATGTGATTG 11568 | || || || || ||| |||| | ||| ||| | || || || | ||| Sbjct 1199 ACGAAGCGGCGAAAGCCACCATGGTGGCATTCGCCAGCGGCAGCGATCTCGACCAGCTTG 1140 Query 11569 GTGCCAATTACAACACCACGCGCCTGACTATCACCCCGGCAGATGATTCGACCATCCCGC 11628 | | ||| || | ||| || ||| | | || |||||| | || | |||| Sbjct 1139 GGGTCAACAACGGCGTCACCCGTCTGGTGCTGAAACCCGCAGATAACAGCACGCTGCCGC 1080 Query 11629 CGACACCGGCAGTGATGGAATCTGACACCGATTATCGTCTGCGTATTCAGCAGGCTTTTG 11688 |||| ||||| | | || ||| ||| | |||||||| || ||||| |||| Sbjct 1079 CGACCCCGGCGCGGCTTGAGAGCGACGACGACTTCCGTCTGCGCATCGCCCAGGCCTTTG 1020 Query 11689 AGGGCTTAAGCGTCGCCGGGTCAGTGGGAGCCTATCAGTATCATGGTCGCAGTGCTGACG 11748 |||| | ||||| || ||| | | || |||||| | ||||| | ||||| || || | Sbjct 1019 AGGGGCTGAGCGTAGCGGGGCCGGGCGGGGCCTATGAATATCACGCCCGCAGCGCCGATG 960 Query 11749 GGCGTGTCGCGGATATTTCTGTCACCAGTCCGTCTCCGGCCTGTGTCACCATCTCTGTGC 11808 | || || |||||| | | | || ||| |||||||||||| |||||| || | |||| Sbjct 959 GTCGCGTGGCGGATGTCACCGCCATCAGCCCGTCTCCGGCCGTGGTCACCGTCACCGTGC 900 Query 11809 TGTCACGTGAAAATAACGGCGTCGCATCCGAAGACCTGCTGGCTGTGGTGCGTAAC---G 11865 |||| |||||| ||||| || || || |||||||| || || ||| | Sbjct 899 TGTCGCGTGAAGGGCGCGGCGAGGCCAGCGCTGAACTGCTGGCCGTCGT---CAACGCGG 843 Query 11866 CCCTTAATGGCGAGGACGTCAGGCCGGTGGCCGACCGCGTGACCGTGCAGTCTGCCGCCA 11925 | || |||| |||||| || | |||||||| || ||||| | ||||||||| || | Sbjct 842 CGCTGAATGACGAGGAGGTGCGCCCGGTGGCGGATCGCGTCAGCGTGCAGTCGGCAAAAA 783 Query 11926 TCGTTGAATACCAGATAAACGCCACGCTTTACCTTTACCCTGGTCCCGAAAGCGAACCCA 11985 |||| || |||| | | |||||||| | || || || || || || || || | Sbjct 782 TCGTCGAGTACCGCGTTGAGGCCACGCTGTTTCTCTATCCCGGGCCGGAGGCGGAGCCGA 723 Query 11986 TCCGCGCTGCCGCTGTGAAAAAGCTGGAAGCGTATATCACGGCACAGCACCGGCTGGGGC 12045 ||||||| ||| | | ||||| || | | | || || ||| |||||||||| Sbjct 722 TCCGCGCCGCCTCGGCAGCCCGGCTGGCGGCCTTTGTAACCGCCCAGTCGCGGCTGGGGC 663 Query 12046 GCGACATCCGTCTGTCTGCCATTTATGCCGCTTTGCATGTGGAAGGTGTGCAGCGTGTCG 12105 |||| ||||| ||| || | ||||| || |||| || || ||||| ||||| || | Sbjct 662 GCGATATCCGCAGGTCAGCGCTGTATGCGGCGCTGCACGTCGAGGGTGTCCAGCGCGTAG 603 Query 12106 AACTGGCTGCACCACTG--GCCGACATCGTGCTCAACAGTACGCAGGCGTCTTTCTGTAC 12163 | ||||| ||| | ||| || || | ||||| | | || |||||| | | ||| || Sbjct 602 AGCTGGC-GCAGC-CTGCTGCTGATGTGGTGCTGGATAAAACCCAGGCGGCGTACTGCAC 545 Query 12164 CGAATAC-CGCGTCGTGACCGGAGGCTCGGATGAGTGATTCGCGACTGCTGCCGACCGGC 12222 || ||| | ||| | ||||| || ||||||||| || |||||||| |||| Sbjct 544 CG-CTACGCAGATCGCGGTAGGAGGTTCCGATGAGTGA---CCGCCTGCTGCCCGTCGGC 489 Query 12223 TCATCACCGCTTGAGGTCGCCGCCGCAAAAGCCTGTGCGGAAATTGAAAAAACGCCGGTC 12282 || |||| ||| ||||| |||||||| ||||||||||| | | | |||||| Sbjct 488 TCGTCACAGCTCGAGGTGGCCGCCGCCGAAGCCTGTGCGCGCCTGCAGCAGCTGCCGGTG 429 Query 12283 AGTATTCGTGAACTGTGGAACCCGGACACCTGTCCGGCAAATCTGCTGCCGTGGCTGGCG 12342 | || |||||||||||| | || || ||| ||||| || | || || Sbjct 428 CCGCTGCGCACCCTGTGGAACCCGCAGACTTGCCCGCTGCCGCTGCTCCCCTATCTCGCC 369 Query 12343 TGGGCGTTTTCGGTCGACAGGTGGGATGAAAAGTGGCCGGAAGCGACAAAACGCGCCGTT 12402 ||||| | ||||| || | |||||| | |||||||||||| ||| || || || Sbjct 368 TGGGCCTGGTCGGTGGATCGCTGGGATCAGGAGTGGCCGGAAGAGACCCGGCGTGCGGTG 309 Query 12403 ATCCGCGATGCCTATTTCATCCACTGTCATAAGGGCACGATAGGTGCAATCCGGCGTGTG 12462 || || | | || |||||| | | |||||||| || || ||||| || ||| Sbjct 308 GTCGCCGCCTCGCAGTTTATCCACCGCCGCAAGGGCACCATCTCGGCGATCCGCCGGGTG 249 Query 12463 GTGGAGCCGCTCGGCTATCTCATCAACGTGACGGAGTGGTGGGAAAACAGTGACCCGCCC 12522 ||||||||||| || ||||||||| | || || |||||| | |||| | | | || Sbjct 248 GTGGAGCCGCTGGGGTATCTCATCCGTATTACCGAATGGTGGCAGAACAACGCCGCACCT 189 Query 12523 GGCACCTTCCGGCTTGATATTGGTGTACTGGAAAGCGGTATCACAGAGGCAATGTATCAG 12582 || || ||| |||| || | ||||||||||||| || || || |||| ||||| | Sbjct 188 GGAACTTTCAGGCTGGACGTCGGTGTACTGGAAACTGGCATTACTGAGGAGATGTACAAC 129 Query 12583 GAAATGGAACGGCTGATTGCTGATGCCAAACCTGCAAGCCGTCACCTTATTGGCCTGAAC 12642 || ||||||| |||||| || || ||||| | ||||| || |||| ||||||| Sbjct 128 GAGCTGGAACGATTGATTGGCGACGCGAAACCCGTCAGCCGCCATCTTACCGGCCTGACA 69 Query 12643 ATTACCCGGGA 12653 || | || ||| Sbjct 68 ATCAACCTGGA 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106739448295110