Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq75855 145 2e-30 seq84525 111 5e-20 seq187742 105 2e-18 seq79893 96.9 1e-15 seq395916 84.2 6e-12 >seq75855 Length=31220 Score = 145 bits (160), Expect = 2e-30 Identities = 313/461 (68%), Gaps = 18/461 (4%) Strand=Plus/Plus Query 15981 GAGGTCATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTCGAC 16040 ||||| || ||| ||||||||||||||||||||| || || || || ||||| | || Sbjct 12493 GAGGTTATCGACAGCAAACTGCGTTATCCAAATACTGCTCTACTTTATGTCGAAGTGGAT 12552 Query 16041 TCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCC--TGCGAACCGCGAGG---GCGTG 16095 || || ||||| ||| | | |||| ||| ||| | ||| ||| || || Sbjct 12553 GCATCGCAATTTAATGGCC--AGGCACCAAAGATCACATGCAAGCCGAAAGGCAAGC-TG 12609 Query 16096 TTATCCGCGTACCGGATACTTACGACCCAGAAACCCGCACTTATAACGGCACCTGGCTGG 16155 || ||||| ||| | |||||| || | | | | ||||| | ||| |||||||||| Sbjct 12610 GTA--CGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTGG 12667 Query 16156 G-GACGTTTAAATGGGCATGGACTGATAATCCGGCCTGGATTTTTTACGATCTGGTGGTG 16214 | ||| || |||| || | || |||||||||| ||||||||||||||||||||| || Sbjct 12668 GCGAC-TTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTG 12726 Query 16215 AGTGACCGCTTTGGCCTTGGCGACCGCCTGACGGCAGCAAATATTGATAAATGGACGCTT 16274 | | || ||| | ||| ||| | || | | ||||| | ||| ||| Sbjct 12727 GATAAAATCTGTGGTATGGGCACGCGCGTTGATGCCTCCATGATTGACAGGTGGGAGCTG 12786 Query 16275 TACCAGGTTGCACAATATTGCGATCAGCCGGTACCAGACGGAAAAGGCGGTTCCGGCACC 16334 ||| | || || || |||||||| ||| || ||| |||| | |||||| Sbjct 12787 TACTCAATCGCGCAGTACTGCGATCAAATGGTGCC------AAACGGCGCTGGCGGCACT 12840 Query 16335 GAGCCTCGCTATACCTGTAACGTGTATGTGCAGGAGAGGAATGACGCTTATACCGTTTTG 16394 ||||| |||| |||||| ||||||| | | ||| | | || || ||||| || || Sbjct 12841 GAGCCGCGCTTTACCTGCAACGTGTTTATCCAGAGCCAGCAGGATGCCTATACAGTCCTG 12900 Query 16395 CGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGG 16435 || ||||||| |||||||| || || |||| |||||| Sbjct 12901 AAGGACATTGCGGCGATATTCCGAGGAATCACGTTCTGGGG 12941 >seq84525 Length=6380 Score = 111 bits (122), Expect = 5e-20 Identities = 208/299 (70%), Gaps = 14/299 (5%) Strand=Plus/Minus Query 18274 TTAATGGCCAGGTCTTTATCAGCTCTGCGTTTATCCAGGATGGCACGATCACGAATGCCA 18333 |||| || ||||| || | | ||||||||||| |||||||| | || ||||| | Sbjct 3696 TTAACGGTCAGGTATTCCTGCGATCTGCGTTTATTCAGGATGGTTCAATAGACAATGCAA 3637 Query 18334 AAATCGGTAATTTTATCCAGTCCAACAATTATGTCGCCGGGCAGTCCGGGTGGAAACTGG 18393 |||| |||||||| |||||||| ||||| |||||||| ||| | | || ||| | || Sbjct 3636 AAATAGGTAATTTCATCCAGTCAAACAACTATGTCGCTGGGTCGACTGGTTGGCAGCTAA 3577 Query 18394 ATAAAGGAGGTACCTGGGAAAACTACGGC---AGCGACGGGGAGGGCGCAAGA--AAG-A 18447 | |||| || || | | |||||||||| | |||||| | |||||| ||| | Sbjct 3576 ACAAAGCTGGAACATTTGTAAACTACGGCTCTGTGGCCGGGGAAG--GCAAGATGAAGCA 3519 Query 18448 CTACGAATGTAACGGACAGCATCAGGGACGCGAACGGCGTTCTCCGCGTACAGATTGGTA 18507 || ||| || |||| | |||| ||||| ||||| || || ||||| || Sbjct 3518 GGAC-AATAACACCATCAGCGTTGCTGACGGCAACGGAGTTCTTCGGGTCCAGATGTGTC 3460 Query 18508 AAATTACGGGGGTATTTT--GATGAC---GTGGGGCATTCAGACGTGGGATGCCAATGG 18561 |||||||||||||| | |||| | |||||||| || |||||||| ||||| Sbjct 3459 GTATTACGGGGGTATTCTAAGATGGCTGAATGGGGCATAGCTACTTGGGATGCTAATGG 3401 >seq187742 Length=2667 Score = 105 bits (116), Expect = 2e-18 Identities = 204/299 (68%), Gaps = 14/299 (5%) Strand=Plus/Plus Query 18274 TTAATGGCCAGGTCTTTATCAGCTCTGCGTTTATCCAGGATGGCACGATCACGAATGCCA 18333 |||| || ||||| || | ||||||||||||| |||||||| |||| || | Sbjct 2339 TTAACGGGCAGGTATTCCTGCGCTCTGCGTTTATTCAGGATGGGTCGATAGATAACCTAA 2398 Query 18334 AAATCGGTAATTTTATCCAGTCCAACAATTATGTCGCCGGGCAGTCCGGGTGGAAACTGG 18393 ||||||| | ||||| ||||| ||||| ||||| |||||| | || ||| |||| Sbjct 2399 AAATCGGACAGTTTATACAGTCAAACAACTATGTTGCCGGGTCAACTGGTTGGCAACTAA 2458 Query 18394 ATAAAGGAGGTACCTGGGAAAACTACGGCAGCGACGGGGAGGGCGCAAGAAAGACTACGA 18453 | |||| || || | | |||||||| | | | || || | | |||||| | | Sbjct 2459 ACAAAGCTGGAACATTTGTAAACTACG---GGGCTGTGGCCGGGGAAGGAAAGATGAAGC 2515 Query 18454 ATGTAACGGACAGCATCAG------GGACGCGAACGGCGTTCTCCGCGTACAGATTGGTA 18507 | | | ||| |||||| |||| ||||| ||||| || || ||||||||| Sbjct 2516 AGGACAATAACACCATCAGCGTTGCCGACGGTAACGGAGTTCTTCGGGTCCAGATTGGTC 2575 Query 18508 AAATTACGGGGGTATTTT--GATGAC---GTGGGGCATTCAGACGTGGGATGCCAATGG 18561 |||||||||||||| | |||| | |||||||| || |||||||| ||||| Sbjct 2576 GTATTACGGGGGTATTCTAAGATGGCTGAATGGGGCATAGCTACTTGGGATGCTAATGG 2634 >seq79893 Length=11432 Score = 96.9 bits (106), Expect = 1e-15 Identities = 303/466 (65%), Gaps = 14/466 (3%) Strand=Plus/Plus Query 15974 CTACACAGAGGTCATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGA 16033 |||| ||||||| | ||| |||||||||||| || ||||| || ||||| ||| |||| Sbjct 8746 CTACGCAGAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGA 8805 Query 16034 ATTCGACTCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCG 16093 || || | ||||||||||||| | || || | ||||| || ||| || Sbjct 8806 GTTTGATGCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCG 8865 Query 16094 TGTTATCCGCGTACCGGATACTTACGACCCAGAAACCCGCACTTATAACGGCACCTGGCT 16153 || || || ||| | ||| |||| | ||||| |||| |||| | ||| Sbjct 8866 CAGGATTCGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGA 8925 Query 16154 GGGGACGTTTAAATGGGCATGGACTGATAATCCGGCCTGGATTTTTTACGATCTGGTGGT 16213 || | ||| ||||| | | | |||| || || ||||||||||| || |||||| | Sbjct 8926 CGGCAATTTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCT 8985 Query 16214 GAGTGACCGCTTTGGCCTTGGCGACCGCCTGACG--GCAGCAAATATTGATAAATGGACG 16271 || | | || || | || |||| || || || | | ||||| || ||| | Sbjct 8986 GAATAAAATTTTCGGAATGGGAAACCG--TGTCGATGCCTCCATGATTGACAAGTGGGAG 9043 Query 16272 CTTTA--CCAGGTTGCACAATATTGCGATCAGCCGGTACCAGACGGAAAAGGCGGTTCCG 16329 || || ||| | ||| || |||||| | |||| | || |||| | || Sbjct 9044 CTATATTCCA--TCGCAGCTTACTGCGATGAAAAGGTATC------TAACGGCGCTGGCG 9095 Query 16330 GCACCGAGCCTCGCTATACCTGTAACGTGTATGTGCAGGAGAGGAATGACGCTTATACCG 16389 | || || || || | |||||||||||| ||| | ||| | | ||||| |||| || Sbjct 9096 GTACTGAACCGCGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACG 9155 Query 16390 TTTTGCGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGG 16435 || || ||| | || || || ||||| || || || | |||||| Sbjct 9156 TTCTGAAGGATATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGG 9201 >seq395916 Length=238 Score = 84.2 bits (92), Expect = 6e-12 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 16320 GGCGGTTCCGGCACCGAGCCTCGCTATACCTGTAACGTGTATGTGC-AGGAGAGGAATGA 16378 |||| | ||| ||||||||||||| ||||||||| | ||||||| | | ||||| || Sbjct 237 GGCGCTGGCGGGACCGAGCCTCGCTTTACCTGTAATGCTTATGTGCAATCACAGGAA-GA 179 Query 16379 CGCTTATACCGTTTTGCGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGGC 16436 || | |||||| ||| || |||||||| ||||| |||||||| || | |||||| Sbjct 178 AGCGTTTACCGTGATGCAGGACTTTGCGGCGATATTTCGTGGCATTACCTTTTGGGGC 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147399368667874