Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq189152 107 3e-18 seq46279 86.0 9e-12 >seq189152 Length=79535 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||||||||| || || || || ||| | || |||| ||| Sbjct 37545 ATGCAGATATTTGTCAAGACACTAACCGGAAAGACCATCACTCTTGAAGTTGAGAGCTCC 37486 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || |||||||||||||| || ||||| || Sbjct 37485 -GACACCATTGATAATGTGAAGGCTAAGATCCAGGATAAAGAAGGTATCCCGCCTGACCA 37427 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| || || || | |||||| || Sbjct 37426 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTCGAGGATGAGCGCACTTTGGCAGATTACAA 37367 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || || || || Sbjct 37366 TATTCAGAAGGAGTCTAC 37349 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 || || || ||| | |||||| ||||||| || || || ||| | ||| | || ||| Sbjct 37089 ATACAGATTTTTGTCAAGACATTAACAGGAAAGACCATCACTCTTGAGGTGGAGAGCTCC 37030 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || || || || || || || || || ||||| Sbjct 37029 -GACACCATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 36971 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || ||| | |||||| | || || || | ||||||||| Sbjct 36970 GCAGAGGCTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAA 36911 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| ||| | ||| | || | || | || ||||| Sbjct 36910 CATCCAAAAAGAATCCACTCTTCATCTTGTCCTGCGCCTCCGTGGTGG 36863 >seq46279 Length=115318 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || || || || ||||| || || || || || |||||| | |||||||| ||||| || Sbjct 66728 ATGCAGGACAAGGAAGGCATCCCGCCAGACCAGCAAAGGTTAATTTTTGCTGGAAAGCAG 66787 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 | || ||| | || ||||||| || || || ||||||||||| ||||| | |||||| Sbjct 66788 CTGGAAGATGGACGGACATTAGCTGACTACAACATTCAAAAAGAGTCAACACTTCATTTG 66847 Query 124746 GT 124747 || Sbjct 66848 GT 66849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750741756252800