Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq196645 206 7e-49 seq201909 138 3e-28 seq79893 120 8e-23 seq153530 84.2 6e-12 seq235341 82.4 2e-11 >seq196645 Length=3446 Score = 206 bits (228), Expect = 7e-49 Identities = 284/395 (72%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 24388 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCTATGCCGAACAAACCATT 24447 ||| || | | |||| ||||| || ||||| || | ||||| || | |||| | |||| Sbjct 3365 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 3306 Query 24448 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCC 24507 || |||||||| | |||||| || || || || |||||||| || || || |||||||| Sbjct 3305 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 3246 Query 24508 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGGCTGTT--TTCGCCATCG 24565 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 3245 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 3188 Query 24566 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 24625 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 3187 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 3128 Query 24626 ATTGATAAAAACAGACCATTCAGTAACGGCTTAACGCCTTCAAGAATATCTTCGCAGCTT 24685 || | || ||||| || || | || ||||| || || | ||||||||| ||| | Sbjct 3127 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 3068 Query 24686 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 24745 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 3067 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 3008 Query 24746 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24780 || |||| || |||||||||||||||| ||||| Sbjct 3007 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 2973 >seq201909 Length=21394 Score = 138 bits (152), Expect = 3e-28 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34363 TAATGGCTAACCTACGCAAAGAAGCGCGCGGCAGAGAATGCCAGGTACGTATTTACGGCG 34422 |||||| ||| |||| ||||||||||| ||||| ||||||||||| | | || Sbjct 7166 TAATGGGTAATTTACGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGGTA 7107 Query 34423 TATGCAATGGCAACCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCG 34482 | ||||||||||| ||||||| || || || || |||||||||| || || || | Sbjct 7106 TCTGCAATGGCAATTCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTGTG 7047 Query 34483 GAACTGGAATGAAGCCTGACGACCTGATCGGTGCATGGGCTTGTAGTGACTGCCACGCGG 34542 ||||||||||||| ||||| ||||| |||| |||||||| || | |||||||| | Sbjct 7046 GAACTGGAATGAAACCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGCTGCCACGATG 6987 Query 34543 AGATCGACCGACGCAC 34558 |||| ||||| || || Sbjct 6986 AGATAGACCGCCGTAC 6971 >seq79893 Length=11432 Score = 120 bits (132), Expect = 8e-23 Identities = 307/468 (66%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 15780 GAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15839 |||||| | || ||||||||| |||||||| || || |||||||||||||| || || Sbjct 8753 GAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGAT 8812 Query 15840 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15899 | |||||| |||||| | ||| || || | ||| || |||||| || Sbjct 8813 GCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATT 8872 Query 15900 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15959 || || || | |||| |||| | ||||| |||| ||| | ||| ||| Sbjct 8873 CGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAAT 8932 Query 15960 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 16019 ||| |||||| | | |||||||||| ||||||||||| |||||||| | | | Sbjct 8933 TTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAA 8992 Query 16020 CGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACGCTTTATCAG 16079 ||||| | || ||||| | || | | ||||| || ||| ||| ||| Sbjct 8993 ATTTTCGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCC 9052 Query 16080 GTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCA 16139 | || || || ||| | | |||| | ||||| || |||||| ||||| Sbjct 9053 ATCGCAGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGG------CGGTACTGAACCG 9106 Query 16140 CGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGAT 16199 |||| |||||| ||||| || || ||| || | | ||||| || | || ||| ||| Sbjct 9107 CGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGAT 9166 Query 16200 TTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATT 16247 | || || |||||||| || || |||| |||||| |||||||| Sbjct 9167 ATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGGGAATAATCAGATT 9214 >seq153530 Length=10618 Score = 84.2 bits (92), Expect = 6e-12 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31673 ATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACGCCTGTTATC 31732 |||||| | |||||| || |||| || |||||||||| ||||| || || || Sbjct 9319 ATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTC 9260 Query 31733 TCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCA 31792 || | |||||| ||| | ||| |||| || | ||||| || ||| || Sbjct 9259 GCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCA 9200 Query 31793 GATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATAGG 31852 ||||||||||| |||||| ||||| ||||| || |||| ||||| | ||||| | Sbjct 9199 GATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGT 9140 Query 31853 GAAGCGGTATATGACGAGAACAGT 31876 || | ||| ||| |||| |||||| Sbjct 9139 GACGAGGTGTATCACGAAAACAGT 9116 >seq235341 Length=2087 Score = 82.4 bits (90), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 28405 GCTATGCAGAAATCACCTGGCTCAACAGCCTGCTCAGGGTCAACCAGAATTAACATCCCG 28464 |||| |||||||||||| ||||| | ||| || || ||||| |||| ||| || Sbjct 660 GCTACGCAGAAATCACCGCTTTCAACTGGAACCTCTGGATCTACCAGTATTAGCATTCCC 601 Query 28465 TCAGGAAAACTAGGTTTGGATCCTGTTGGCGCGGTCATGGAATTACCTTCAACCTCAAGC 28524 || || ||||| ||| || |||| || || ||||| || | |||| |||||||||| Sbjct 600 TCTGGGAAACTTGGTCTGCTTCCTTGAGGTGCCGTCATCGAGTGACCTGAAACCTCAAGC 541 Query 28525 CAGAATGCAGAATCACTGGCTTTTTTGGTTG-TGCTTACCCATCTCT 28570 || |||| | | |||||| ||||||| ||| || |||||| Sbjct 540 CAAAATGAATTCTTTGAGGCTTTCTTGGTTGAGGCTATCCAATCTCT 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126267789021788