Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq274325 114 1e-21 seq492334 111 2e-20 seq154911 102 8e-18 seq29369 86.0 6e-13 seq492452 80.6 3e-11 >seq274325 Length=6435 Score = 114 bits (126), Expect = 1e-21 Identities = 103/129 (80%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAG---GCAA 14590 |||||||||||||||| |||||||||| ||||||||||||||| | || || | |||| Sbjct 5811 AGTAAAATGGTTTAACTCAGATAAAGGTTTTGGCTTTATCACTCCCGATGATGGCAGCAA 5870 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| | |||| || ||||| || ||||| |||| | |||| | ||||||||||| Sbjct 5871 AGATGTATTCGTGCATTTCTCTGCTATCCAGGGTGATAACTACAAAACGCTTGATGAAGG 5930 Query 14651 TCAAAAAGT 14659 ||| ||||| Sbjct 5931 TCAGAAAGT 5939 >seq492334 Length=820 Score = 111 bits (122), Expect = 2e-20 Identities = 106/135 (79%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAG---GCAA 14590 |||||||||||| ||||| |||||||| || |||||||| || ||||||| | |||| Sbjct 297 AGTAAAATGGTTCAACGCTGATAAAGGCTTCGGCTTTATTTCTCCAGAAGACGGCAGCAA 356 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| |||||| ||||| || |||||||| | || | |||| | || |||||||| Sbjct 357 AGATGTGTTCGTACACTTTTCTGCAATCCAGGGTACTGATTACAAAACCCTCGATGAAGG 416 Query 14651 TCAAAAAGTTGAATT 14665 || ||||||||||| Sbjct 417 CCAGAAAGTTGAATT 431 >seq154911 Length=3834 Score = 102 bits (112), Expect = 8e-18 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 14535 GTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCA---AA 14591 || || |||||||| | | |||||| ||||||||||| ||| | ||||| || | || Sbjct 3642 GTTAAGTGGTTTAATGAATCTAAAGGGTTTGGCTTTATTACTCCGGAAGATGGAAGTAAA 3701 Query 14592 GATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGT 14651 ||| | || | |||||||||||| || ||| | ||||||| ||| | || | |||||| Sbjct 3702 GATGTATTTGTTCACTTCTCAGCTATACAAAGTAATGGATTTAAAACTCTAGCAGAAGGT 3761 Query 14652 CAAAAAGTTGAATTTGA 14668 |||| ||||||||||| Sbjct 3762 CAAAGTGTTGAATTTGA 3778 >seq29369 Length=12721 Score = 86.0 bits (94), Expect = 6e-13 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTAT---CACTTCAGAAGAAGGCAA 14590 |||||||||||||||||| || ||||| || ||||| || | | | || | |||| Sbjct 4009 AGTAAAATGGTTTAACGCTGAGAAAGGTTTCGGCTTCATTTCCCCAACTGACGGCAGCAA 3950 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| |||||| |||||||| |||||||| | || |||||| | || || ||||| Sbjct 3949 AGATGTGTTCGTACACTTCTCTGCAATCCAGGATTCAGGTTTCAAAACCCTGGAAGAAGG 3890 Query 14651 TCAAAAAGTTGAATTT 14666 || |||||| | ||| Sbjct 3889 CCAGAAAGTTAACTTT 3874 >seq492452 Length=827 Score = 80.6 bits (88), Expect = 3e-11 Identities = 99/135 (73%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAG---GCAA 14590 |||||||||||||||| | || ||||| || ||||| || || ||| ||| | |||| Sbjct 416 AGTAAAATGGTTTAACTCTGAAAAAGGCTTCGGCTTCATTACGCCAGCAGATGGCAGCAA 357 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| | |||| || |||||||| ||||| | | | | |||| | || || ||||| Sbjct 356 AGATGTATTCGTACATTTCTCAGCCATCCAGAGTAACGATTACAAAACGCTGGACGAAGG 297 Query 14651 TCAAAAAGTTGAATT 14665 || || ||||| || Sbjct 296 GCAGAAGGTTGAGTT 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48174709437866