Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq248802 515 9e-142 seq129892 172 1e-38 >seq248802 Length=12257 Score = 515 bits (570), Expect = 9e-142 Identities = 812/1154 (70%), Gaps = 22/1154 (2%) Strand=Plus/Plus Query 16979 TATCATCACGGTGTCCGGGTCCAAGAGATCAATGACGGGACCCGCCCCATTCGCACCATC 17038 ||||| ||||| || || ||| || ||||||||||| |||||| ||| ||| | Sbjct 2081 TATCACCACGGCGTACGCGTCGTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTA 2140 Query 17039 GCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTCCA 17098 ||||| | || ||||| |||| ||| || | || || || ||||||| || || Sbjct 2141 TCCACCTCTATTGTCGGCATGGTCTGCACTGCAGCGGATGCTGATGCCACCGTATTCCCG 2200 Query 17099 CTCGATACGCCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCAGC 17158 ||| | |||||||| || || ||| |||||||||| || | || || || || |||| Sbjct 2201 CTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGC 2260 Query 17159 GGTACGCTGCCCGCAAGC-CTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTGTGGT 17217 || |||||| || |||| ||||| || || ||||||||| ||| | | || ||||| Sbjct 2261 GGCACGCTG-GCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACGGTGGT 2319 Query 17218 GGTGCGGGTGAAGCCGGGCGAGGATGAAGCCGCGACCAATAGCGCGGTCATCGGCGGCGT 17277 |||||| || || ||| || || ||||| || |||| ||| ||||||||||| Sbjct 2320 GGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAATATCATCGGCGGCAG 2379 Query 17278 CAGCGCCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGCCAAGGCCCGCTTGGG 17337 | || | ||| |||||||| ||||| || |||| || || || || | | || Sbjct 2380 CGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCGACCTTGG 2439 Query 17338 CGTGGTACCGCGCATCCTCGGCGTGCCGGGCCTGGATACCCAGCCGGTCGCTACCGCACT 17397 ||| ||||| || |||||||||||||| |||||| | | | || || ||||| || Sbjct 2440 CGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGCGCT 2499 Query 17398 CATCGCCATCGCCCAGCAACTGCGCGCCTTCGCTTATGTCTCCGCCAGCGGCTGCAAGAC 17457 || ||| |||||| ||||||||||||| ||| |||| || |||||| || || Sbjct 2500 GGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTACGGCTGTAAAAC 2559 Query 17458 --AAAGGAAGAGGCCACCGCCTACCGCGAGAACTTCGCCGCGCGCGAAGCCATGGTGATC 17515 ||| || || | || ||||| |||||| | |||||| ||||||||| Sbjct 2560 GGTAAG--CGATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCGCGAGCTGATGGTGATC 2617 Query 17516 TGGCCGGACTTCCTGACGTGGAGCACCGTGGTCAAC----CAGACCGTGCCTGCGCCAGC 17571 ||||| ||||| | | |||| ||||||| || | | || ||||| |||| | Sbjct 2618 TGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGAAACTGCCTATGCCACC 2677 Query 17572 TGTTGCCCAGGCACTGGGCTTGCGTGCCCGGATCGATCAGGAGGTCGGTTGGCACAAGAC 17631 |||| || || ||| |||| ||| |||||| | || ||| ||||| || || Sbjct 2678 ----GCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAGCGGCTGGCATAAAAC 2733 Query 17632 CCTGTCGAACGTCGCCGTCAACGGCGTGACCGGCATCAGCGCCGACGTGTTCTGGGACCT 17691 |||||||||||||| ||||||||||||||||||| | |||| || ||||||||||| Sbjct 2734 CCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTCCGCCTCGGTATTCTGGGACCT 2793 Query 17692 GCAGAGCCCCAGCACCGACGCCAACTACCTCAACGAGAACGAG-GTCACCACCCTGGTGC 17750 |||| | ||||| ||| | || || || | | || |||||||| ||| | | Sbjct 2794 GCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGA-AGCCAGCGTCACCACGCTGATCC 2852 Query 17751 AGGAAGGGGGATTCCGTTTCTGGGGTTCGCGCACCTGCAGCGATGATCCGCTGTTCGCCT 17810 ||| || ||||| |||||||| |||||||| |||||||| ||||||||||||| Sbjct 2853 GCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGCTGTTCGCCT 2912 Query 17811 TCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACTATCGCCGAAGCGCACATGT 17870 | || |||| ||||||| | || |||||| | |||||||| || ||||| ||||| |||| Sbjct 2913 TTGAAAACTTCACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATGCGCATATGT 2972 Query 17871 GGGCGGTTGACAAGCCCATGCACCCGTCACTGGTGCGCGACATCCTTGAGGGCGTGAACG 17930 |||| |||||||| || ||| | |||||||||||||| | | || | |||| Sbjct 2973 GGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCGGGATCAACG 3032 Query 17931 CGAAGTTCCGCGAGC---TCAAGGGGCTCGGTCTGATCATCGACGCCCAGGCCTGGTACG 17987 | |||||||| |||| |||| | |||| | | | |||| | |||||||| Sbjct 3033 CCAAGTTCCGTGAGCTGATCAACG---CCGGTTATCTGCTGGGCGCCAACTGCTGGTACG 3089 Query 17988 ACCCCAACGTGAACGACAAGGACACGCTCAAGGCCGGCAAGCTGCGCATCACCTACGACT 18047 || | || ||| | |||| | || || |||||||||||| ||| |||||||| Sbjct 3090 ACGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACTACGACT 3149 Query 18048 ACACCCCGGTGCCGCCGCTCGAGGACCTGACCTTCTTCCAGAAGATCACCGACAGCTATC 18107 | ||||||||||||||||| || || |||||| | ||| || ||||||||||| | Sbjct 3150 ATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACAGCTACC 3209 Query 18108 TCGTCGACTTCGCC 18121 | | |||||||| Sbjct 3210 TGGCGAACTTCGCC 3223 >seq129892 Length=23088 Score = 172 bits (190), Expect = 1e-38 Identities = 662/1005 (66%), Gaps = 56/1005 (6%) Strand=Plus/Minus Query 12801 GATCAGCAGGCGGAAATCGCCGCCCGCCTCGCCCTGGAGTCCGAACCGCTGACCAAGCTG 12860 ||| |||||| || || ||| | | | |||||| ||| || ||| | ||||||| Sbjct 1305 GATAAGCAGGAGGCGATAGCCCGCACCTTAACCCTGGCGTCGGAGCCGATCGTCAAGCTG 1246 Query 12861 CTCGAGGAAAACGCATACCGCGAAATGCTCTGGCGCCAGCGGGTCAACGAGGCGGCTCTC 12920 || ||||| ||||| |||||||| || || ||||||||| | ||||| ||||| Sbjct 1245 CTGGAGGAGAACGCCTACCGCGAGGTGATCCTGCGCCAGCGCATTAACGAAGCGGCGAAA 1186 Query 12921 GCCAACATGCTGGCCAGCGCCCAGGGCGCTGACCTCGACCAGCTCGCCGCGAACTACAAC 12980 |||| |||| |||| |||| ||| || ||||||||||| | | ||| || | Sbjct 1185 GCCACCATGGTGGCATTCGCCAGCGGCAGCGATCTCGACCAGCTTGGGGTCAACAACGGC 1126 Query 12981 GTCAAGCGCCTGGTCATCCAGCCTGGAGATCCGTCGAAGGTGCCGCCCGTGCCGGAACTG 13040 |||| || ||||| | | || | |||| | | ||||||| |||| | | Sbjct 1125 GTCACCCGTCTGGTGCTGAAACCCGCAGATAACAGCACGCTGCCGCCGACCCCGGCGCGG 1066 Query 13041 CTGGAGTCCGACGACAGCCTGCGCGAGCG-GGCGCAGATGGCCTGGGAAGGCCTCAGCAC 13099 || ||| ||||||| | | || ||| ||| | ||||| || || || ||| Sbjct 1065 CTTGAGAGCGACGACGACTTCCGTCTGCGCATCGCCCA-GGCCTTTGAGGGGCTGAGCGT 1007 Query 13100 CGCGGGACCGCGTAACAGCTACATCTTCCACGCCCGCGCCGCCGACGGTCGCGTCGGCGA 13159 ||||| ||| | ||| | ||||||||| |||||| |||||||| | || Sbjct 1006 AGCGGGGCCGGGCGGGGCCTATGAATATCACGCCCGCAGCGCCGATGGTCGCGTGGCGGA 947 Query 13160 TGCCTCGGCCGTCAGCCCATCGCCTGCCGTTGTCGTGGTGACGGTGCAGGC-CGCCCAGG 13218 || | | ||| ||||||| || || ||||| ||| || || |||| | | || ||| Sbjct 946 TGTCACCGCCATCAGCCCGTCTCCGGCCGTGGTCACCGTCACCGTGCTGTCGCGTGAAGG 887 Query 13219 GCAACGGCAGCGCCCCGGCGGACCTGCTGGCCATCGTCGACGCCTACCTCAACGACGCCG 13278 || |||| ||| || || ||||||||| ||||| |||| || || |||| | Sbjct 886 GC-GCGGCGAGGCCAGCGCTGAACTGCTGGCCGTCGTCAACGCGGCGCTGAATGACGAGG 828 Query 13279 ACCGTCGCCCCGTCGCTGATCGCCTAACAGTCCAGTCCGCCCAAGTGCTCGAGTACCGTG 13338 | ||||| || || |||||| | | || ||||| || || | |||||||||| | Sbjct 827 AGGTGCGCCCGGTGGCGGATCGCGTCAGCGTGCAGTCGGCAAAAATCGTCGAGTACCGCG 768 Query 13339 TCGACGCGACGCTCTACCTGGCCACCATCGGCCCGGAGTCCGAGCCGATACTCGATGCCG 13398 | || || ||||| | || | | | ||| |||||| | |||||||| | | |||| Sbjct 767 TTGAGGCCACGCTGTTTCT--CTATC-CCGGGCCGGAGGCGGAGCCGATCCGC---GCCG 714 Query 13399 CC-CGG--GCCCGCTTGACGGCCTACGTCCATCAGC---GTCGACGCCTGGGCATGGAAG 13452 || ||| ||||| || |||||| || | | || |||| || ||||| || Sbjct 713 CCTCGGCAGCCCGGCTGGCGGCCTTTGT--AACCGCCCAGTCG-CGGCTGGGGCGCGA-- 659 Query 13453 TGTCCGAA--TCGGCGGTGCATGCGGCCCTCCACGTGGAAGGCGT---GCGC-AAGGTCA 13506 | |||| | || ||| || ||||||| || ||||| || || || |||| || | Sbjct 658 TATCCGCAGGTCAGCGCTGTATGCGGCGCTGCACGTCGAGGGTGTCCAGCGCGTAGAGCT 599 Query 13507 CGCTCAGCAACTGGT-CGGACATCGCCGCCACA-CCAGCCCAGGCGCCCTACTGCACCGG 13564 || |||| ||| | | || | | || | | |||||||| | |||||||||| Sbjct 598 GGCGCAGC--CTGCTGCTGATGT-GGTGCTGGATAAAACCCAGGCGGCGTACTGCACCG- 543 Query 13565 AATTACGCTGA---CGCTGGG------GGATGAGTGATGCCCAGCTTGCTCCCACGCAAC 13615 ||||| || || | || ||||||||| || || ||| || || | Sbjct 542 --CTACGCAGATCGCGGTAGGAGGTTCCGATGAGTGACCGCCTGC-TGC-CCGTCGGCTC 487 Query 13616 GCCACCGAACTTGAG--CGCCTGGCCGCCGAAGCCCTGGCGCAGATTGAGCGGGTACCGA 13673 | ||| | || ||| ||| |||||||||||| |||| | ||| | | ||| Sbjct 486 GTCAC--AGCTCGAGGTGGCC--GCCGCCGAAGCCTGTGCGCGCCTGCAGCAGCTGCCGG 431 Query 13674 TCCCATTGCGCCAACTGTGGAACCC-CAGCACCTGCCCGGTCGCCCTTCTGCCGTACCTG 13732 | || ||||| ||||||||||| ||| || |||||| | | || || || || || Sbjct 430 TGCCGCTGCGCACCCTGTGGAACCCGCAG-ACTTGCCCGCTGCCGCTGCTCCCCTATCTC 372 Query 13733 GCCTGGGCGTTCTCCGTCGATCGCTGGGA-CAGCACCTGGCCGGA 13776 |||||||| | || || ||||||||||| ||| | |||||||| Sbjct 371 GCCTGGGCCTGGTCGGTGGATCGCTGGGATCAGGA-GTGGCCGGA 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113060154114284