Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq171584 489 5e-134 seq75855 84.2 7e-12 seq79893 82.4 3e-11 >seq171584 Length=782 Score = 489 bits (542), Expect = 5e-134 Identities = 582/781 (75%), Gaps = 6/781 (1%) Strand=Plus/Plus Query 33624 GCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATC 33683 |||| ||||| ||||||||||| | ||||||||| || ||||||||||||||||| ||| Sbjct 3 GCCAAGCGTTCACTGTAGCGAATCCCGACGTATTGCGATCCCCTGTCGGAATGATGGATC 62 Query 33684 AAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACA 33743 | |||| | | || ||||| || || ||||| || || || |||||||| || Sbjct 63 AGGCGACCGTTACCTTCAGGCTGGCGAGCATAGAGCGCCTGCTCCAGCGCATCCAGCACG 122 Query 33744 AAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCG 33803 |||||||| ||||| |||||| ||||||||||| || || ||||| ||||||||| Sbjct 123 AAGTCCGTCGTCATGCTGTTGCTGACACGCCAGCCAACGATGCGACGGGCAAACACGTCG 182 Query 33804 ATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACC 33863 || ||||| ||||| ||||||||||||||||| ||||| || || ||||| || |||||| Sbjct 183 ATGACGAAGGCCACATACAGCCAGCCTTGCCAGGTCGATACGTAGGTAAAGTCGGACACC 242 Query 33864 CAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGC 33923 || ||||| || || || |||||||||||||| || ||||| ||||||| ||||| | Sbjct 243 CAAAGCTGGTTGGGACGATCAGCCTTGAACTGACGATTGACCCGGTCCAACGGGCAGGCT 302 Query 33924 GCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAGCCC 33983 || | ||| | | ||| ||||||| ||||||| || || || | |||||| Sbjct 303 GCCCTGCGATCAGAACGCGTGGTGCGAAGTTGCTTACCACGCCGGGCTCC-CTGAAGCCC 361 Query 33984 -TGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCAT 34042 ||| | ||||||||| | ||||| || ||||| | | | ||| || || || | Sbjct 362 TTGCTGGCGCATCAACCGCTCTACCGTACAACGTGCGATAGATACGCCCTCACGATTGAG 421 Query 34043 CTGCTTCCAGACCTTCGGCA-CGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGA 34101 ||| ||| ||||| | || | ||||| || |||||||||| ||||| || || ||| Sbjct 422 CTGTCGCCACACCTT-GTCAGCACCGTACACACGCATGTTGGCGTGCCACACCCGGCTGA 480 Query 34102 TCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGC-GTTTCGACGGATCGCGA 34160 | || | ||| | | |||| || || || || |||| | || |||| ||| Sbjct 481 TTTCAACTCGCAGTACCGCATCACGCTTGCTACGAGCACAGCACAATTGA-GGATTGCGC 539 Query 34161 AGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGC 34220 | ||||||| | || || | |||||||||| | |||| ||||||||||||||| Sbjct 540 TGCCTCGCTGCATAAAGCCGATATGCTGACGGGGCAACCTGCAATACCTTGCAGATCGGC 599 Query 34221 TCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGT 34280 ||||||||| | | || |||| |||| || ||| || | ||||| | ||||| Sbjct 600 TCGACCCCGTGGATATCCCGATAGCGATCGATATAGGTATTTACGACTTCAGTTTGCGGT 659 Query 34281 CGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCA 34340 ||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||| Sbjct 660 CGAGCTCCGCCTGCGCGAAAAAAGCGCTCGCGGTCTTGAGAATCTCGTTGGCACGGCGCA 719 Query 34341 GTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCCGTACTCACGCCAT 34400 |||||||||||||||||||| || ||||| || |||||||||||||| || ||||||| Sbjct 720 ATTCCTTGACCTCGCGCTCCAGTGCCTTGATACGCTCACGCTCGGCCGTGCTGACGCCAT 779 Query 34401 C 34401 | Sbjct 780 C 780 >seq75855 Length=31220 Score = 84.2 bits (92), Expect = 7e-12 Identities = 168/249 (67%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 17920 CGTGTTCCGACAAATTACGATCCGGAGACCCGCACGTATTCGGGCACTTGGGATGGCACG 17979 || |||||||| |||||||| || | | | | || || || || ||| ||| Sbjct 12613 CGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTGGGCGAC 12672 Query 17980 TTCAAGGCAGCATGGACGAACAATCCAGCTTGGGTCTACTACGGCCTACTGCTCGACAAG 18039 ||||| || | || || ||||| || ||| | | |||| || |||| || || Sbjct 12673 TTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTGGATAAA 12732 Query 18040 CTCAACGGATTGGGCGACCGTGTCGATGCGTCGATGGTCGACAAGTGGGCGCTGTACGCA 18099 || || ||||| || || ||||| || ||| | |||| ||||| ||||||| || Sbjct 12733 ATCTGTGGTATGGGCACGCGCGTTGATGCCTCCATGATTGACAGGTGGGAGCTGTACTCA 12792 Query 18100 ATCGCGCGTCACTGTGACGAGCTGGTATCGGACGGGAAGGGCGGCAAGGAGCCGCGCTTT 18159 ||||||| |||| || | |||| | |||| ||||||| |||||||||||| Sbjct 12793 ATCGCGCAGTACTGCGATCAAATGGTGCCAAACGGCGCTGGCGGCACTGAGCCGCGCTTT 12852 Query 18160 ACGTGCAAC 18168 || |||||| Sbjct 12853 ACCTGCAAC 12861 >seq79893 Length=11432 Score = 82.4 bits (90), Expect = 3e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18045 CGGATTGGGCGACCGTGTCGATGCGTCGATGGTCGACAAGTGGGCGCTGTACGCAATCGC 18104 |||| |||| ||||||||||||| || ||| | |||||||||| ||| || | ||||| Sbjct 8998 CGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCCATCGC 9057 Query 18105 GCGTCACTGTGACGAGCTGGTATCGGACGGGAAGGGCGGCAAGGAGCCGCGCTTTACGTG 18164 | |||| || || |||||| |||| ||||| | || ||||| ||||| || Sbjct 9058 AGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGGCGGTACTGAACCGCGTTTTACCTG 9117 Query 18165 CAACTGCGTGATTCAGACAAAGGCGGATGCGTTCAAGGTCGTGCAGGATATCGCAAGTGT 18224 ||| || |||| || ||| |||| || || || ||||||||||| | Sbjct 9118 TAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGATATCGCAGCAAT 9177 Query 18225 CTTTCGCGGGATTTCGTATTGGGGG 18249 ||| || || ||| | | |||||| Sbjct 9178 CTTCCGGGGAATTACCTTCTGGGGG 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169660213822670