Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq159964 149 1e-31 seq223569 111 3e-20 seq119848 109 1e-19 seq30176 96.9 7e-16 seq155840 95.1 2e-15 seq239679 87.8 4e-13 seq453554 82.4 2e-11 seq71472 80.6 5e-11 >seq159964 Length=5345 Score = 149 bits (164), Expect = 1e-31 Identities = 400/604 (66%), Gaps = 22/604 (4%) Strand=Plus/Plus Query 11407 CCGCCTTTTAGTGCGTCTTCAATGGTTACCACATAACGCCACTGACCATCTGGACAAAGT 11466 ||||| || | |||||||||| ||| | || ||||||||||| ||||||||||| || Sbjct 472 CCGCCCTTGATCGCGTCTTCAAGGGTAATGACGTAACGCCACTGGCCATCTGGACACAGC 531 Query 11467 CGCCCACCGTCACGCAATTCTGCAAAAGTT-GGGAATG--------GCACG-TTTTTGCG 11516 ||||| |||||||||| ||| || || || ||||| | ||||| ||||||| Sbjct 532 CGCCCGCCGTCACGCAGTTC-GCTGAATTTCGGGAAGGTGGTCGCCGCACGCTTTTTGCT 590 Query 11517 TTTAGGGTCGCCATCTCGCCAGTTATCGCCACTCCAGAACGAATAAGATTCGTGGAATTT 11576 | || | || ||| | || || ||||||||| ||| | | |||| ||| Sbjct 591 ------GCCG--AGCTT-CCACTCTTCCCCGGTCCAGAACGGATAGGCCTGGTGGGTTTT 641 Query 11577 TGAAGACGGTGTGCTGAAATAGGTTTCGCGCCATTTCGCGTGTGTTGCCATCGCAGAAGC 11636 | || || ||| || || || ||||||||| |||| || ||||| || || Sbjct 642 GGCCGATGGCGTGGAAAAGTACGTGGTGCGCCATTTATCGTGCGTGGCCATGGCGCTGGC 701 Query 11637 CACATCATTGAATCGTTGGAAATCTCGA-ATCCATGCGTATTCGTCACCATACACATGGC 11695 ||| || || | ||| | ||| ||| | ||| ||||| || | |||| ||| | Sbjct 702 CACTTCGTTCAGGCGT-GCAAAGTTCGGCACCCAGAAATATTCATCGCAGTACAGATGCC 760 Query 11696 CACTGTTACCTTGTGACGTGTTTTTGTTGGTCGATAAAAAATGCAGTTCCGCGCCATTGC 11755 | |||| || | ||||||||||| || || | || |||||||||| || |||| Sbjct 761 CGCTGTAGGACTGCGCGGTGTTTTTGTTAGTGGACAGGAAGCGCAGTTCCGCACCGTTGC 820 Query 11756 TTAAAATAATCGGGTTGCCAGTCAGCTCAACACCGAAATATTCCCTCGCCATCTTCACAA 11815 | | || || || || |||||| | || ||||| | | ||| || ||||||| Sbjct 821 TCAGCCGGATAGGATTACCCGTCAGCGTGATGCCAAAATACTGCTCCGCGATGTTCACAA 880 Query 11816 TGTAATTTTTAAAGATTTCTGCTTGCCGTTTACTGGCGGATAAGAAAATTTGATTGTCAC 11875 |||| || | || || ||| ||||| || || | ||||| || ||| | Sbjct 881 TGTACGAGCGGAACACCTCCGCCTGCGCCTTACTCGCAGAAAGAAAAATCTGCGGGTCGC 940 Query 11876 CGCTGAAAATTGCATCTTCCAACGCTTCAAAACTAAAATAATAGGTCGCCCCAATTTGGC 11935 | | | | |||| || ||||||||||| |||||| |||| || || || |||| Sbjct 941 CCGTCAGTACGGCATTCTCAAACGCTTCAAACGCAAAATACCAGGTGGCACCGATCTGGC 1000 Query 11936 GCGATTTCAGAATATTGCGCACATCGTGGTGCTTGTTAGCGCGGATGTGTTTTTGATAAT 11995 | ||| || || |||||||| | ||| |||| ||| | |||||| ||||| Sbjct 1001 GGCTTTTGAGGATGTTGCGCACCTGTTGGCCAATGTTGAGGCGCAGGTGTTTCTGATAGC 1060 Query 11996 CAAA 11999 |||| Sbjct 1061 CAAA 1064 >seq223569 Length=13158 Score = 111 bits (122), Expect = 3e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 356 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 415 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 12635 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 12694 Query 416 CGACTGAGCTAACGACCCAAT 436 | |||||||||||||||| || Sbjct 12695 CAACTGAGCTAACGACCCGAT 12715 >seq119848 Length=1010 Score = 109 bits (120), Expect = 1e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 356 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 415 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 481 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 540 Query 416 CGACTGAGCTAACGACCC 433 | |||||||||||||||| Sbjct 541 CAACTGAGCTAACGACCC 558 >seq30176 Length=2762 Score = 96.9 bits (106), Expect = 7e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 361 TGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGACT 420 ||||||||| |||||| |||||| ||||||| ||||||||||| |||||||||| ||| Sbjct 2047 TGGGTCGTGCAGGATTTGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACT 2106 Query 421 GAGCTAACGACCC 433 ||||||||||||| Sbjct 2107 GAGCTAACGACCC 2119 >seq155840 Length=13837 Score = 95.1 bits (104), Expect = 2e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 754 GGGGCGAAGTGCGCATAACGCATCGTCATTTCGATAGTTGAATGACCGAGGATTTCTTTC 813 || |||||||| ||||| | ||| ||||||| ||| ||| || || |||| || Sbjct 11010 GGTGCGAAGTGGGCATATCTCATAGTCATTTTTATATCACTATGGCCTAGTATTTTTTGG 10951 Query 814 AACACTAAAATATTCCCACCGTTCATCATAAAATGGCTGGCGAACGTATGGCGCAAAACG 873 | |||| ||| || || || ||||||||||| ||||| || || || || || | ||| Sbjct 10950 AGGACTAGAATGTTGCCTCCATTCATCATAAAGTGGCTTGCAAATGTGTGCCGGAGTACG 10891 Query 874 TGGGTTAGTTGCCCTTTGGGTAACTCAATTTCAGCACGCAAAACAGCATT 923 || || ||||||||| ||| | ||| |||| || ||| || |||||| Sbjct 10890 TGAGTAAGTTGCCCTGCGGGAAGCTCTATTTTCGCGCGCTCAAGAGCATT 10841 >seq239679 Length=8567 Score = 87.8 bits (96), Expect = 4e-13 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 760 AAGTGCGCATAACGCATCGTCATTTCGATAGTTGAATGACCGAGGATTTCTTTCAACACT 819 ||||| || ||| ||| ||||| ||| || ||||| || ||||| || | ||| Sbjct 6076 AAGTGAGCGTAAATCATGGTCATGGTGATTTCAGAGTGACCCAGTATTTCCTTGAGCACA 6017 Query 820 AAAATATTCCCACCGTTCATCATAAAATGGCTGGCGAACGTATGGCGCAAAACGTGGGTT 879 | |||||| || |||||||||||||||||||| || || || || || || || ||||| Sbjct 6016 AGAATATTGCCGCCGTTCATCATAAAATGGCTTGCAAAAGTGTGTCGTAATACATGGGTA 5957 Query 880 AGTTGCCCTTTGGGTAACTCAAT 902 | || ||| ||||| ||||| Sbjct 5956 AACTGATTTTTTGGTAATTCAAT 5934 >seq453554 Length=307 Score = 82.4 bits (90), Expect = 2e-11 Identities = 187/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9819 CCTGCAGGGAATCGGTGTGCGGTTAGCACATCTTGTGCAGAGATGTTTTTGATATTCGCA 9878 ||||| ||||| ||||| ||| | ||||| || ||||| |||||| || | |||||| Sbjct 296 CCTGCCGGGAAGCGGTGCGCGTTGAGCACGTCCTGTGCGCTGATGTTCTTCACGTTCGCA 237 Query 9879 AATTCATCTTTTGTCCCAGTGTCGCCAATAGGAATCACTTTTAACCCGTCAGGATGACCG 9938 |||||||| || | ||| | || || || || | || | | |||||| | ||| Sbjct 236 AATTCATCCTTCGCGCCAATATCACCCATCTCGATAAACTTCACCGCGTCAGCGTCACCA 177 Query 9939 TTCGCAATATTCACAAACATGGAACGGAAGTTTCCAACTCCCTTAGATTCACT-GATCTT 9997 || ||||||||| | || | | |||||| || | |||| | | || || | || Sbjct 176 CCCGGAATATTCACCAGGATAGTGCTGAAGTTGCCGA-TCCCCTTGCTTTGCTCCAGCTG 118 Query 9998 TCTTGCGATCTCTTCTTCCATTTCTTCGGTTAAGTCGGGATCTGTGGAGTACAAAATAAA 10057 | | | ||||||||||||| ||| || || | | | || || | ||||| || Sbjct 117 ACGTCCAATCTCTTCTTCCACTTCGTCCGTCATGGCCGGGTCGCGCGTGTACAGGATGCC 58 Query 10058 GCCCATATGCGCACCATTGCTAAAATAGCGACGGCGAAA 10096 |||| | || || || ||| | ||||| ||||| || Sbjct 57 GCCCGTGTGTGCGCCGTTGTGGTAGTAGCGGCGGCGGAA 19 >seq71472 Length=1850 Score = 80.6 bits (88), Expect = 5e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||||| || ||||||||||||||| |||| | |||||| |||| |||||||||| Sbjct 1333 TTGGTGGGCTGTCAAGGATTCGAACCTTGGACCTATTGATTAAGAGTCAACTGCTCTACC 1274 Query 417 GACTGAGCTAAC 428 ||||||||||| Sbjct 1273 AACTGAGCTAAC 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100107001574940