Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq189010 105 2e-18 seq499007 104 6e-18 seq147806 98.7 3e-16 seq286911 96.9 9e-16 seq462907 93.3 1e-14 seq240744 80.6 7e-11 seq102074 80.6 7e-11 >seq189010 Length=996 Score = 105 bits (116), Expect = 2e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17158 GGCCCTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 17217 |||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 849 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 790 Query 17218 CCAGCAAGGGCCA 17230 ||||||||||||| Sbjct 789 CCAGCAAGGGCCA 777 >seq499007 Length=4346 Score = 104 bits (114), Expect = 6e-18 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 134 CATTGCTGTCAGTCATCCATGCTCCGTATACATTGAAAACCATCTGGGCACTTGCATGGC 193 ||| | | |||| |||||||||||| || || | | | |||||||| ||| || |||| Sbjct 4214 CATCGTTTTCAGCCATCCATGCTCCATAGACCTGGTAGACCATCTGTGCATCAGCGTGGC 4155 Query 194 CCATCTGGCTGGCAATGAAGCTTGGATTTGCTCCGGCAGATAATGACCAGCACGCATAAG 253 |||| || || |||||| | || || || ||||| || ||||||||||| ||||| | Sbjct 4154 CCATTTGTGATGCGATGAAGTTCGGGTTGGCCCCGGCGGACAATGACCAGCAAGCATATG 4095 Query 254 TGTGTCGTGACTGGTATGCCTTTCG 278 | || || |||||||| ||||| || Sbjct 4094 TATGCCGGGACTGGTACGCCTTGCG 4070 >seq147806 Length=6067 Score = 98.7 bits (108), Expect = 3e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142 TCAGTCATCCATGCTCCGTATACATTGAAAACCATCTGGGCACTTGCATGGCCCATCTGG 201 |||| |||||| || || || || ||| ||||| || ||| | | || ||||| || Sbjct 3802 TCAGGCATCCACGCCCCATAAACGTTGTGGACCATTTGAGCATTGGTGTGACCCATTTGA 3861 Query 202 CTGGCAATGAAGCTTGGATTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 261 | ||||| ||| | || || ||||| |||| ||||||||||||||||| |||||||| Sbjct 3862 GTTGCAATAAAGTTAGGGTTAGCTCCTGCAGCCAATGACCAGCACGCATATGTGTGTCGA 3921 Query 262 GACTGGTATGCCTT 275 ||||| ||||| || Sbjct 3922 GACTGATATGCTTT 3935 >seq286911 Length=6367 Score = 96.9 bits (106), Expect = 9e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 17158 GGCCCTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 17217 ||||| |||||| |||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 5790 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 5731 Query 17218 CCAGCAAGGGCCACCA 17233 |||||| ||||||||| Sbjct 5730 CCAGCAGGGGCCACCA 5715 >seq462907 Length=336 Score = 93.3 bits (102), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 17142 TTATTATCCTGCGCCC--GGCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCG 17198 |||| |||||||||| ||||| ||||| ||| ||| ||||| |||||||||||||| Sbjct 116 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 57 Query 17199 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA 17233 | |||||||||||||| |||||| ||||||||| Sbjct 56 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCA 22 >seq240744 Length=10054 Score = 80.6 bits (88), Expect = 7e-11 Identities = 122/174 (70%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 15097 GGACACGTATATATAATATCAAATATTGGTTCATTTGGTGAGAATGTATATAAAGTTGGT 15156 || || || ||| | || || ||||| || || |||||||||||||| | ||| ||||| Sbjct 1464 GGTCATGTTTATGTTATCTCTAATATCGGCTCTTTTGGTGAGAATGTCTTTAAGATTGGT 1523 Query 15157 ATGACTCGACGTCTGGAACCAATGGATAGAGTTAAAGAATTGGGTGATGCATCTGTACCA 15216 ||||| || || || || || || | ||| | || ||||| ||| || || || Sbjct 1524 ATGACACGCCGCCTCGACCCTCAAGACCGCGTTGACGAGTTGGGCAGTGCGTCGGTGCCG 1583 Query 15217 TTTGATTTTGATGTGCATGCCATGATTTCCTGCGATGATGCTCCAGCTTTGGAA 15270 || |||||| | ||||||||||| | | || ||||| || || ||||| Sbjct 1584 TTCCTATTTGATATCCATGCCATGATCCACAGTGAAGATGCACCGGCAATGGAA 1637 >seq102074 Length=1593 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17334 TGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGA 17393 |||||| ||||||||| ||| ||||||| ||||||||||| | |||||| ||||||| Sbjct 1063 TGCGTTCTTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCGA 1122 Query 17394 ATCCAGTACAACGC 17407 |||| ||| ||||| Sbjct 1123 ATCCTGTAGAACGC 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135311456180274