Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq121512 150 3e-31 seq416309 93.3 6e-14 >seq121512 Length=219671 Score = 150 bits (166), Expect = 3e-31 Identities = 426/647 (66%), Gaps = 32/647 (5%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| || || Sbjct 213212 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 213153 Query 125294 TGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCGACA 125349 || | ||||| ||||| | |||| || || ||||| ||| ||||||| Sbjct 213152 CGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACA 213097 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| | |||| | | || |||||||| | || || Sbjct 213096 CCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGGGGAGC 213037 Query 125410 -CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 ||||| | || | | || || |||||| ||| |||||||||||||| ||||| Sbjct 213036 GCTTCG----CGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGC 212981 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | || |||| ||||||| ||||||||||||||||| |||||||| || || || | Sbjct 212980 TCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTC 212922 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 |||||| | || || || ||||||||||| ||||| ||||| ||| || || | || Sbjct 212921 CAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT-CTACG 212863 Query 125588 CAACTATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | || ||| | | | || ||| || ||| || | || || ||| Sbjct 212862 ACATCCTCCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCGTGTCCG 212812 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | |||||| || || ||||| | ||| | || || | | | |||| Sbjct 212811 AGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCA 212752 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || | || ||| || ||||||| ||||| || || || || || || | | Sbjct 212751 TGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CATGG 212695 Query 125767 TGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | ||| |||||| | |||||||||| || || || || | ||| ||| | Sbjct 212694 CGCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCT 212635 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 212634 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 212588 >seq416309 Length=254 Score = 93.3 bits (102), Expect = 6e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 ||||| || |||| || || || ||||| || |||| | || || | || | Sbjct 239 ACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACGCTCTGCCTTGTGCCCTGCTC 180 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 ||||||||| ||| || |||||| ||||||| ||||| || || || ||||| || | Sbjct 179 GGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTC 120 Query 125763 GAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | | ||| ||||| | ||||| |||| || ||||| || |||||| | | Sbjct 119 GCACTC---GGCAACAAGAAGTTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAAC 63 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || | || ||||||||||| ||||||||| ||| |||||||| Sbjct 62 ATCTCCCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTAC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736434796063960