Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq37562 159 9e-35 seq194023 149 2e-31 seq459734 89.7 1e-13 >seq37562 Length=17931 Score = 159 bits (176), Expect = 9e-35 Identities = 204/277 (74%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 35166 GATCCGGAATCGCCGGAAAGCTTCATGTTACGTCCGAAACGCCGTCGATGGGTCAATGAG 35225 ||||| ||| ||||||| | || ||||||| || || ||||| |||||| ||| ||| Sbjct 14653 GATCCTGAAACGCCGGAGACGTTTCTGTTACGGCCAAAGCGCCGCCGATGGAGCAACGAG 14712 Query 35226 AGATATACCCGCTGGGGTTAAATCCCAGCCGTGCGCCTGCTGCGGGAAGCAGGCGGATGA 35285 | ||||||| |||| || ||||||||| ||||| ||||| | || || || Sbjct 14713 AAGTATACCCAGTGGGCC-AAGCAGCAGCCGTGCTTGTGCTGTGGGAAAAAAGCAGACGA 14771 Query 35286 TCCGCACCACCTGATAGGCCACGGTCAGGGAGGGATGGGAACAAAGGCGCATGACCTCTT 35345 |||||||||||||| || |||| ||||| || |||||||| || |||||||| || || Sbjct 14772 CCCGCACCACCTGATCGGATACGGCCAGGGCGGTATGGGAACTAAAGCGCATGATCTATT 14831 Query 35346 TGTGCTGCCGTTGTGCAGAACGCATCACAATGAGTTACATGCGGA-CACCGTGGCATTCG 35404 ||| ||||| | |||||| |||| ||| |||| | ||||| || ||| || || | Sbjct 14832 CGTGTTGCCGCTATGCAGAGCGCACCACGATGAACTTCATGCTGATGTGCGT-GCGTTTG 14890 Query 35405 AAGAGAAATACGGCTCTCAACTGGAGTTGATATTTCG 35441 | | || |||||| | || | ||||||||| |||| Sbjct 14891 AGGCTAAGTACGGCACACAGCCGGAGTTGATCATTCG 14927 Score = 109 bits (120), Expect = 1e-19 Identities = 395/624 (63%), Gaps = 67/624 (11%) Strand=Plus/Plus Query 33619 AAGCATGAATAATTTAATGGTCATTGATGGTATCGAAGTTCGCCGCGACGTTCATGGG-- 33676 ||| |||||| | ||| | || |||||||| | || |||| || | | | || Sbjct 13139 AAGTATGAATCAGTTACTCGTAATTGATGGCGTTTCTGTACGCCAGGA--TACCTCGGGA 13196 Query 33677 CGCTATTGTCTTAACGATTTGCACCGTGCTGCTGGTGGAGAGCAGAAATATCGTCCGAAA 33736 |||||||| || |||||||| ||||| ||||||||||||||| || || || Sbjct 13197 CGCTATTGCCTGAACGATTTACACCGCGCTGCTGGTGGAGAGGAGCGGCATAAGCCTCGT 13256 Query 33737 TACTGGCTTGATAATAAGCAAACCCGTGAGCTGATTGAGCAACTTTTCACCGAGGGCGGA 33796 | |||||| | || |||| || | ||||| | || || || |||||||| ||| Sbjct 13257 TTCTGGCTGGGGAACCAGCAGACGCAGGAGCTTGTACAGGAA---TTAACCGAGGGTGGA 13313 Query 33797 ATTCCACCCTCGGAACAAAATCAATCCGTTAGCTTTTTTCAGGGCGGTAGTGATACCCAA 33856 | ||| |||| ||||||||||||| | ||||| Sbjct 13314 AATCCTCCCTTGGAACAAAATCAACCAGTTAG---------------------------- 13345 Query 33857 AATTTGGGTATCGCTCCAGTAAATACTGTTCGCGGTGGTGCTGAACAAGGTACATACGTA 33916 ||||| ||| |||||||| | | | || || || ||| Sbjct 13346 -----------------AGTAA------TTCACGGTGGTGATAACCGTGGCACCTATGTA 13382 Query 33917 TGCAAAGAACTGGTGTTTGCTTATGCAATGTGGATCAGCCCGTCTTTCCATCTCAAGGTG 33976 |||||||| ||||| | |||||||||||||||||||| |||| ||| || ||||| Sbjct 13383 TGCAAAGAGCTGGTTTACTCTTATGCAATGTGGATCAGCTCGTCATTCAGCCTGAAGGTT 13442 Query 33977 ATCCGCACGTTCGAT--CGGATTACCAGTGCGCCACAAACATCTTCTGGTATGGCT---G 34031 ||| | || || ||| | | | || | || ||| || || || | | | Sbjct 13443 ATCAGGACCTTTGATTCAGTAGTGACA--GGGCAACATACCTCACAGGGACCGAATCGGG 13500 Query 34032 CCGATAAGATGCAGGCGGGGGTGATTCTGC-TGGGTTTTATGCGCAAAGAGTTAAACCTG 34090 | ||| || |||||||||| || ||||| | || || | | | | | || ||| Sbjct 13501 CAGATCAGGTGCAGGCGGGCGTAATTCTACTTGAGTCTGCCTCACGTA-CCCTGAATCTG 13559 Query 34091 TCCAATTCATCGGTACTGGGCGCGTGCCAGAAACTCCAGGAGGCAGTGGGACTACCTAAC 34150 || || ||||| ||||| || | ||||||||| ||||| | || || || ||| Sbjct 13560 TCGAACTCATCAAAGCTGGGTGCTTACCAGAAACTTCAGGATTTCGCTGGCCTGCCAAAC 13619 Query 34151 CTGGCGCCACAATATGCCATTGATGCTCCGGCTGGCGCGCTGGATGGTTCAAGCCGCCCG 34210 || ||| |||||||||||| || || ||| | | ||||||||||||||||| Sbjct 13620 ATGATGCCTTCATATGCCATTGACGCGCCCTCTGATTCCATTGATGGTTCAAGCCGCCCC 13679 Query 34211 ACGCTGGCACTGAGCGCGCTGTTA 34234 || |||| || | | ||||| || Sbjct 13680 ACAATGGCCCTCACCACGCTGCTA 13703 Score = 102 bits (112), Expect = 2e-17 Identities = 221/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 25444 TCATCAATATCCAGATCGCGGCGTTCAGTTGCCAGCATGGTCAGATCTGCATACTTCACT 25503 ||||| | | ||| ||| ||||| ||||| ||||||| ||| ||||| ||| ||| Sbjct 4494 TCATCCAGACCCAAATCACGGCGCTCAGTACCCAGCATCACCAGGTCTGCCATCTTTACT 4553 Query 25504 AC-GCTGGCTTCTTCCAGTGGCAAGCCAAACTTAAAGCGGATCAGTTGATCGGTACGTTT 25562 | | || | | | | |||| | || |||||| || |||| | || |||| Sbjct 4554 GCAGGTGACAT-TGCTGGTGGAAGTCCGAACTTATTACGAATCACTGCGTCAACACGTCC 4612 Query 25563 CTCAATCTCGCGATAATCAGGCAGTAACGCTTTTAATGGGGCAGGGATATCCTGGCAATA 25622 |||||| | |||| ||||| || | ||||| | ||| | | ||| || |||||| Sbjct 4613 CTCAATGGCCTGATAGTCAGGTAGCAGGGCTTTCAGTGGTGAATTGATGTCGCTGCAATA 4672 Query 25623 CGCTTCGGCTGCGTCGTGCATCAGGGCTTCAAAGGCAAACTCCGGTGATACAAGCTGGCT 25682 ||||| || || ||||||| |||||||||| || || | | || || | ||| Sbjct 4673 AGCTTCAGCGGCATCGTGCAGAAGGGCTTCAAGAGCGTGTTCATGCGGCACCAGATAGCT 4732 Query 25683 GCACAGTACGGAATGCTGCGCCACGCTATAAAATTCAGGGAGATGTCCGGAGAAGCGGCA 25742 | | || || ||||| || ||||| || ||||| | ||| || | ||| ||||| Sbjct 4733 GACGTGAACAGAGTGCTGGGCTACGCTGTAGAATTCGCTCACATGGCCAGTGAACCGGCA 4792 Query 25743 AATATTGGAAAGCGCCACGGCGATATCT 25770 |||||| || || || | ||||||||| Sbjct 4793 AATATTCGACAGAGCGGCAGCGATATCT 4820 >seq194023 Length=5833 Score = 149 bits (164), Expect = 2e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 31024 CATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAA 31083 |||||||||| | | |||| |||||| |||| ||| || || || ||||| |||| Sbjct 1271 CATGAGCATGAATTTAATGGCTAAAGCCATGAGCATTAAGGTTGGCAACCCATTAAGAAA 1212 Query 31084 ACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTA 31143 || || ||||| ||||| ||||| || |||| |||| | || || |||||||| ||| Sbjct 1211 GCTTGTGCTGATAAAGCTTGCTGACAACGCCAACGATAAAGGCGAATGCTGGCCTTCCTA 1152 Query 31144 CCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGC 31203 |||||| ||||| |||||||||||||| ||||| || || |||||| |||||||| | Sbjct 1151 CCAGCACATTGCCGACCAGTGCGAGATAAGCAAGCGGTCAGTGATGCGTCATATTGATGA 1092 Query 31204 CCTTTGTGAG 31213 |||||| ||| Sbjct 1091 CCTTTGCGAG 1082 >seq459734 Length=325 Score = 89.7 bits (98), Expect = 1e-13 Identities = 94/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 28224 AAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGA-TGCTTATATCGACAAAAA 28282 |||| | || ||||| || ||||| |||||||| | | | |||| | ||||||||||| Sbjct 157 AAAGTCGAAAACATAAATTCCATCTCCATCGAAGTTGCACACTGCT-ACATCGACAAAAA 99 Query 28283 TAAGATCTCCGGGTTCAATTGTTGGTGCCATGCTGTCACCGCGCACGTTAATCA-CTTTA 28341 | ||||| || || ||||| ||| | |||||||||| ||||| ||||| |||| ||||| Sbjct 98 TCAGATCGCCAGGCTCAATGGTTCCTTCCATGCTGTCGCCGCGAACGTTGATCAGCTTTA 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127594278365822