Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq399404 201 3e-47 seq449472 176 1e-39 seq37562 132 1e-26 >seq399404 Length=241 Score = 201 bits (222), Expect = 3e-47 Identities = 169/205 (82%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 28805 AGGCTTGCGCGA-GTTCTCCATGCGAGGTGCGGTGACGTGCTGGCAGATTGAAGCATCCA 28863 ||||||| ||| || |||||||| || || || |||||||| |||||||||||||| | Sbjct 204 AGGCTTG-GCGCTGTGGTCCATGCGGGGAGCAGTTACGTGCTGACAGATTGAAGCATCAA 146 Query 28864 TGCGTGCAGGCAGTTTTCCGCGTACCGCAAACAGGCAATCTTCGCTGTTTGCCCTTGTCA 28923 || | |||| |||||| ||||||||||| || |||||||||||||||| ||||| Sbjct 145 GTCGCGATGGCAATTTTCCCTTCACCGCAAACAGACAGTCTTCGCTGTTTGCCCGTGTCA 86 Query 28924 TATGTCCCATGCCTATCGCACTGTTCCCCTTGTGCTTATTCGTCTTGTGCCAGGTGAATC 28983 | || ||||| || ||||| ||||| || ||||||||||| || |||||||||||||||| Sbjct 85 TGTGGCCCATCCCGATCGCGCTGTTACCTTTGTGCTTATTGGTTTTGTGCCAGGTGAATC 26 Query 28984 CCTTCATGGTCATCAGCTTGAATCC 29008 ||||||||||||||||| ||| || Sbjct 25 CCTTCATGGTCATCAGCCGGAACCC 1 >seq449472 Length=298 Score = 176 bits (194), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 28982 TCCCTTCATGGTCATCAGCTTGAATCCCCACGCCTCGACTACTTTCAATGCCTCAACCGG 29041 ||||||||||||||||||| ||| ||||| || || | || |||| || || | ||| Sbjct 298 TCCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGG 239 Query 29042 CTGAGTCGGAACCCACCACATAGCCAGCAGACAATCATCGGCGGAAAGATCCCACACTGG 29101 ||||| || |||||||||||||||||||| |||| || |||| | ||||| || || Sbjct 238 TTGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGG 179 Query 29102 CAGGCGGCAGATATCCAGCACGTTCATTACCGGATATTTGAACCCGGCGCCACGTTCTCC 29161 || ||||| |||||| ||||| |||| | ||||| || ||||| ||||| || Sbjct 178 CAAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCC 119 Query 29162 GTCGGCCGCTTTGTCGCGGTATGTCCAGGGAGGATCTGCGTAGATAAGAGTGTATTTACC 29221 |||| ||||| |||||||| ||||| || |||||||| || || || |||||||| Sbjct 118 GTCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT--- 62 Query 29222 GGTCATGCCGC 29232 | |||||| || Sbjct 61 GCTCATGCTGC 51 >seq37562 Length=17931 Score = 132 bits (146), Expect = 1e-26 Identities = 243/355 (68%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 39276 ATGGCTAAATCCCCAGCAGAGCGCAAAGCAGCGCAGCGTGCGCGGCAGTACGCCGCCGGT 39335 |||||||| || ||||||| |||||||| |||||||| || |||||| ||| |||| Sbjct 3121 ATGGCTAAGTCAGCAGCAGAACGCAAAGCCGCGCAGCGCGCACGGCAGGCTGCCAGCGGT 3062 Query 39336 GAGCGCAAGCTTGAGCTGGTACTGGATGGGCAGGAACTGGAAATGCTGGCGCGGAACTGC 39395 |||| || || |||||||| | |||| |||||||| |||||||||| ||| ||| | Sbjct 3061 GAGCAGAAACTGGAGCTGGTGTTAGATGCTCAGGAACTCGAAATGCTGGAGCGTAACCGG 3002 Query 39396 ACAGCCCGTCGCCATGGTCGTGCGCCGTATGACATGAGCGAGTACATCGCGTTGCTGATC 39455 ||||| || | || | | | || || || |||||| ||||| | || || Sbjct 3001 GTCGCCCGCCGTCCAGGCAGAGACTCTTACGAGCTGGCCGAGTATATCGCCCTTCTCATT 2942 Query 39456 CGCCAGGATGATGCCCGCGTTCGTGGCCGTATCAAATCCATCAGCGCGAACCGATGCGGG 39515 || |||||||||||| | | | || | ||||| |||| ||| || || || Sbjct 2941 CGTCAGGATGATGCCAGGGCAAAAGCACGCTTTAAATCGCTCAGTAAGAAACGCTGTGGC 2882 Query 39516 AAATGTGGCGATTCACTGCCGGTTAAGTCGTGTCCGTGCGATGGTGATTCGGCATGTTGG 39575 ||||| ||| |||||||| || || | || | | || || || |||||| Sbjct 2881 CGTTGTGGTGATCAGCTGCCGGTGCAGAGTTGCCTGTTACAGGAAGAGTCAGCCTGTTGG 2822 Query 39576 GTAACCCG---TGGATGGCATGAAACTAAATTATCAGTGTGACATGTCACGATAT 39627 | | || ||||||| ||||| |||| | | | ||||||||||||| ||| Sbjct 2821 G---CGCGAAATGGATGGTATGAAGTTAAAATCACGGCGTGACATGTCACGCTAT 2770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126073746216066