Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq201909 419 9e-113 seq369136 150 7e-32 seq154733 123 9e-24 seq147806 109 2e-19 seq203346 100 1e-16 seq235341 91.5 6e-14 seq200655 87.8 7e-13 seq248231 82.4 3e-11 >seq201909 Length=21394 Score = 419 bits (464), Expect = 9e-113 Identities = 458/604 (76%), Gaps = 6/604 (1%) Strand=Plus/Minus Query 37715 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 37774 |||| |||||||| || ||||| | || || |||||||| || | ||||||||| | Sbjct 20631 TTCACCGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCT 20572 Query 37775 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCA 37834 ||||||||||||||||||| || ||||| | ||||| ||||| || |||||||| | Sbjct 20571 CGATGAACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGA 20512 Query 37835 CGACATAATGCAGGCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 37894 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 20511 TAATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCAT 20452 Query 37895 CTTTTCGTGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTT--ATGGC 37952 | || | || |||||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 20451 CCTTGCCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGC--ACTTTTGATGGC 20394 Query 37953 CTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTC 38012 ||||||||||| |||||||||||||||||||| || || || || ||||| |||| || Sbjct 20393 ATCGAAACCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTC 20334 Query 38013 AAGGCCATTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTC 38072 ||||| || |||||||| | || || || ||||| |||||||||| | || || Sbjct 20333 GAGGCCTCGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATC 20274 Query 38073 GCGATAGATGATCGGGGATTCAATAACATTCACGCCGGAAGTGAACTCAAACAGGGTTCT 38132 |||||||| ||| || | ||| | ||| ||||| | ||||||||||| || | ||| Sbjct 20273 GCGATAGAGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCT 20214 Query 38133 GGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCAC 38192 || || || | ||| || ||||| || ||||| || || || || ||||||||||| Sbjct 20213 CGCTGAGTCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCAC 20154 Query 38193 ACCGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTT 38252 || ||||| ||||| || | || ||||||||||||||| |||||||| | ||| || Sbjct 20153 GCCAGTGCATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTT 20094 Query 38253 CTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGA-ACTTCTGAAGCGGTGATGACGCCGA 38311 | || ||| ||||||| || ||||| ||| || || || || |||||||||| Sbjct 20093 GGTGCCGCTGCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGA 20035 Query 38312 GCCG 38315 | || Sbjct 20034 GTCG 20031 Score = 89.7 bits (98), Expect = 2e-13 Identities = 235/359 (65%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 39908 GCGGCTTTGATAGTCATATCATCTGAATCAAATATTCCTGATGTATCGATATCGGTAATT 39967 ||||| ||||| ||||| || || |||||||| | || || || | || | ||| Sbjct 17310 GCGGCCTTGATTGTCATGTCGTCAGAATCAAAGAGGCCGTCAGTTTCTACGGCGATGATT 17251 Query 39968 CTTATTCCTTCGCTACCATCCATTGGAGGCCATCCTTCCTGACCATTTCCATCATTCCAG 40027 | | |||| ||||||||||| || ||||| ||||| |||||||||||||||| ||| Sbjct 17250 TTGAACCCTTGACTACCATCCATAGGGGGCCAGCCTTCTTGACCATTTCCATCATCCCAA 17191 Query 40028 TCGAACTCACACACAACACCATATGCATTTAAGTCGCTTGAAATTGCTATAAGCAGAGCA 40087 |||||| | || |||||| | || | || | | | | | | | Sbjct 17190 TCGAACAGGGAAACGGCACCATGGGTGTTGTATCCGTGCTCATATACCAACGGAATAATG 17131 Query 40088 TGTTGCGCCAGCATGATTAATACAGCATTTAATAAAGAGCCGTGTTTATTGAGTCGGTAT 40147 || || ||||||||||||| || ||||| | | ||||| || ||| || ||| Sbjct 17130 TGCTGTGCCAGCATGATTAGAACGGCATTGAGAACGCTTCCGTGCTTCATGACGCGATAT 17071 Query 40148 TCAGAGTCTGACCAGAAATTATTAATCTGGTGAAGTTTTTCCTCTGTCATTACGTCATGG 40207 ||| || |||||| | ||||||| ||| | || || | | ||| ||| Sbjct 17070 TCATGATCGCTCCAGAATTCGTTAATCTCAGTCAGTGCTGAATCAGTTACGATGTCGTGG 17011 Query 40208 TCGATTTCAATTTCTATTGATGCTTTCCAGTCGTAATCAATGATGTATTTTTTGATGTT 40266 || ||||| | |||| ||| |||||||| || |||| |||| ||||| | ||| Sbjct 17010 TCAATTTCCACGGTTATTTCTGCCTTCCAGTCATAGTCAACCGTGTACTTTTTAACGTT 16952 >seq369136 Length=224 Score = 150 bits (166), Expect = 7e-32 Identities = 142/181 (78%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 37715 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 37774 |||| |||||||| || |||||| | || || ||||||||||| | |||||||||| Sbjct 43 TTCACCGCCATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATTTTTT 102 Query 37775 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCA 37834 ||||||| ||||||||||| || || || | |||||| ||||| || |||||||| | Sbjct 103 CGATGAATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCAACGA 162 Query 37835 CGACATAATGCAGGCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCAT 37894 | | ||| | |||||||||||||| || ||||||||||| || || |||||||||| Sbjct 163 TTATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCAT 222 Query 37895 C 37895 | Sbjct 223 C 223 >seq154733 Length=15709 Score = 123 bits (136), Expect = 9e-24 Identities = 248/359 (69%), Gaps = 29/359 (8%) Strand=Plus/Minus Query 28443 CTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCGACCTCCGTCTGACCGGTTCGGAT 28502 ||||||||||| | ||| || ||| || |||| ||||| | ||||| ||||| Sbjct 11597 CTCTTACTTCTGCGGGTCGCAGGCTATAAACGCAGCCACCTCTGCGATACCGGCGCGGAT 11538 Query 28503 TCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCCGTCACTATGACGGTTAAACAGAT 28562 |||||||| || ||||| |||||||| ||||| | | | | | || | ||||| Sbjct 11537 CCGCACCTCACACAGGTCCTTCCTCGTCACCAGAACGGCGGCCAGCGCCGTCATACAGAG 11478 Query 28563 GACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTCATAGCCTGCTTCTCCTTGCCTTT 28622 || ||| |||||||| || |||||||| ||||| ||||| | ||| |||||||| ||| Sbjct 11477 GATGATAAGGGCGATAAAGATCGCCTTGTGCTGTTTCAT-GGTTGC-TCTCCTTGTCTTG 11420 Query 28623 CGGCACGTAAGAGGCTAACCTACATG-TGTTCAGCAT-GGATTGAGCCTCAGATTAATGT 28680 || | |||||| |||||||| ||| || | ||||| |||| | ||||| | || || | Sbjct 11419 CGACGTGTAAGACGCTAACCT-GATGTTGCTAAGCATAGGATAG-GCCTCGGGTTGAT-T 11363 Query 28681 TAAGCGTCTTGCCGGACGCGTAATGTTAACTGGGGCTTTTCTCTATCTGCCGT-TG--GT 28737 || || || | ||||||||||||| |||||||| || Sbjct 11362 GAAAAATC-------ACTC------------GGGGCTTTTCTCTTTCTGCCGTCTGCAAA 11322 Query 28738 GTTCATGCCCGAGGCAGATAGCCTCAAGCACCCGCAGCAATTCTACTTAACTCTCCTTT 28796 ||||| ||||||| |||||||||||||||| | ||| ||| | ||| | ||| Sbjct 11321 CAGCATGCTTAAGGCAGAAAGCCTCAAGCACCCGCGGGAATAATACAAACCTCACGTTT 11263 >seq147806 Length=6067 Score = 109 bits (120), Expect = 2e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 32026 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 32085 ||||||||||| || |||||||| |||| |||||| || ||| ||| ||||| || Sbjct 3802 TCAGGCATCCACGCCCCATAAACGTTGTGGACCATTTGAGCATTGGTGTGACCCATTTGA 3861 Query 32086 GATGCAATAAATGTCGGGTTTGCTCCGGAAGATAAAGCCCAGCACGCATAGGTATGGCGT 32145 | ||||||||| | ||||| ||||| | || || | |||||||||||| || || || Sbjct 3862 GTTGCAATAAAGTTAGGGTTAGCTCCTGCAGCCAATGACCAGCACGCATATGTGTGTCGA 3921 Query 32146 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTA 32185 |||||||| ||||| | | | ||||| ||| ||||| Sbjct 3922 GACTGATATGCTTTCCTGTCTGTAATACCTGCTACTTTTA 3961 >seq203346 Length=2488 Score = 100 bits (110), Expect = 1e-16 Identities = 102/127 (80%), Gaps = 7/127 (6%) Strand=Plus/Minus Query 56576 GCGCATCTCACGCGCATCTCACAACACAGAACCTTT-CAGGATGACCCTTGAGGATACCG 56634 ||||| | ||||||| | | | | |||||||||| ||||||| ||||||||| |||| Sbjct 1119 GCGCACCGCACGCGCTT---AAATCCCAGAACCTTTTCAGGATGCACCTTGAGGA-ACCG 1064 Query 56635 GTTTGGCTGTCGGTGCCTTTCTGTGGGCTGGATTCCTGTGAGACAAGGTTCATCACTAAA 56694 | | | ||||||| || |||||| |||| | |||||||| |||| |||||||||||||| Sbjct 1063 GCTAG-CTGTCGGAGC-TTTCTGGGGGCCGTCTTCCTGTGCGACAGGGTTCATCACTAAA 1006 Query 56695 AGGAAAT 56701 ||| ||| Sbjct 1005 AGGTAAT 999 >seq235341 Length=2087 Score = 91.5 bits (100), Expect = 6e-14 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 42955 GCTATGCAGAAATCGCCGGGCTCAACAGCTTGCTCAGGGTCAACCAGAATTAACATCCCG 43014 |||| ||||||||| ||| ||||| | ||| || || ||||| |||| ||| || Sbjct 660 GCTACGCAGAAATCACCGCTTTCAACTGGAACCTCTGGATCTACCAGTATTAGCATTCCC 601 Query 43015 TCAGGAAAACTAGGTTTGGAACCTGTTGGTGCGGTCATTGAGTTACCTTCAACCTCAAGC 43074 || || ||||| ||| || ||| ||||| ||||| |||| |||| |||||||||| Sbjct 600 TCTGGGAAACTTGGTCTGCTTCCTTGAGGTGCCGTCATCGAGTGACCTGAAACCTCAAGC 541 Query 43075 CAGAATGCAGAGTCACTGGCTTTTTTGGTTG-TGCTTACCAATCTCT 43120 || |||| | | |||||| ||||||| ||| ||||||||| Sbjct 540 CAAAATGAATTCTTTGAGGCTTTCTTGGTTGAGGCTATCCAATCTCT 494 >seq200655 Length=6025 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 28004 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 28063 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 1024 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 1083 Query 28064 TCTTTCGGAGA-AACATTCTGCCCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 28119 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 1084 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 1139 Query 28120 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 28179 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 1140 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 1199 Query 28180 TTCAAGGATAACCCATGCATCATC 28203 ||| || | |||||||| ||||| Sbjct 1200 TTCCAGAACGACCCATGCGTCATC 1223 >seq248231 Length=1874 Score = 82.4 bits (90), Expect = 3e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 44228 CAATCCACAGGAGTAATTATGACAAAACAACTCAGTCCTTACCAGGACAAAATTCACAAA 44287 ||| | ||||||||||||||||||||| | | | || |||||||||||||| || ||| Sbjct 1731 CAAACAACAGGAGTAATTATGACAAAAAAGCGCCGTTCTTACCAGGACAAACCGCATAAA 1672 Query 44288 CACATACTACGTGATCGCTTCCT 44310 ||||||| ||||| |||| ||| Sbjct 1671 AACATACTTCGTGACCGCTACCT 1649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190314639028456