Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq79071 217 2e-51 seq222524 181 1e-40 seq1462 167 2e-36 seq65234 156 4e-33 seq209331 125 8e-24 seq213894 116 4e-21 seq260686 96.9 4e-15 >seq79071 Length=852 Score = 217 bits (240), Expect = 2e-51 Identities = 159/185 (86%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 62063 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62122 ||| ||||| |||||||||||||| | || |||||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 62123 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62182 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 62183 CTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACC 62242 ||||||||||||||||| |||||||||||||||| ||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 62243 TTCAA 62247 ||||| Sbjct 361 TTCAA 365 >seq222524 Length=8439 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 62063 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62122 ||| || || |||||||||||||| | || ||||| ||||||||||| || |||| ||| Sbjct 4025 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 4084 Query 62123 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62182 |||||| || || ||||||||||| || || |||||||||||||||||||| ||||| || Sbjct 4085 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 4144 Query 62183 CTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACC 62242 ||| || || |||||||| ||||| || | ||| | ||| |||||||| || ||||| || Sbjct 4145 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 4204 Query 62243 TTC 62245 || Sbjct 4205 CTC 4207 >seq1462 Length=4781 Score = 167 bits (184), Expect = 2e-36 Identities = 318/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Minus Query 142154 TTTTACCAAGGCGTTCCATCATGAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAA 142213 |||||||| | |||| |||||| | || || || | ||||| || | || || | Sbjct 1464 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 1406 Query 142214 TACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGT 142273 |||||| | || || || |||||||||||| ||||||| | | || | ||| |||| Sbjct 1405 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 1346 Query 142274 GCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATT 142333 ||||||| || ||| || ||| || ||||| || || | || ||||| || ||||||| Sbjct 1345 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 1286 Query 142334 TTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCA 142393 | || || || ||||| ||||| |||| || ||| ||| ||||| | ||||||| Sbjct 1285 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 1226 Query 142394 TACCGATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTT 142453 || ||| ||| ||||||| ||| | ||||||||||| || || |||| Sbjct 1225 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 1166 Query 142454 TAGAAATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142513 |||| |||| || || | ||||| ||| ||||| | ||| ||| || Sbjct 1165 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCAC 1106 Query 142514 CTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTG 142573 || |||| || || ||| |||||||| || || || | || ||||| |||| Sbjct 1105 ACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTG 1046 Query 142574 GGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGA 142620 | || || || |||| || | || || |||||||||||||| ||| Sbjct 1045 GCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 999 >seq65234 Length=1614 Score = 156 bits (172), Expect = 4e-33 Identities = 291/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 142219 TTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 142278 ||||| || | ||| | |||||||| | |||||||| || || | ||||| ||||| Sbjct 695 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCAT 754 Query 142279 ATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142338 ||||| ||| | | || || || || || | || |||||||||||||||||||||||| Sbjct 755 ATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACT 814 Query 142339 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCG 142398 || ||||||| ||||| | || |||||| || ||||| |||| || | | | Sbjct 815 GCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTG 874 Query 142399 ATCTTAGAACCTTCT---GCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTA 142455 | ||| || | || || |||| |||| |||| || || || || ||||||| | Sbjct 875 A---TAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGA 931 Query 142456 GAAATATATTCAATAATTGATGCTGAAGTTTT---GTTAATAGATTTTAACGAATCACCG 142512 |||| ||||| | ||| ||| |||| | |||||||| ||||| ||| | Sbjct 932 GAAACATATTTTACAAT---TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCA 988 Query 142513 GCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATT 142572 |||||| | |||||| | || || |||||||| || | | |||| |||||| Sbjct 989 CATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATC 1048 Query 142573 GGGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGAATAATATGTTTC 142632 || || || | || | || | ||| |||| |||| |||||| || ||||| ||| Sbjct 1049 GGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTC 1108 Query 142633 AAACG 142637 | ||| Sbjct 1109 ATACG 1113 >seq209331 Length=9407 Score = 125 bits (138), Expect = 8e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 62075 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62134 ||| ||||| || | || || || |||||||||| |||||| ||||||||||| || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 62135 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 62194 || |||||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 62195 TTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248 ||| |||| || || || ||||||||| ||||| ||||| ||||| || Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 488 >seq213894 Length=28734 Score = 116 bits (128), Expect = 4e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 62070 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 62129 |||| ||| |||||||| | ||| || || |||||||||| |||||| ||||| ||| Sbjct 8982 CTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAG 8923 Query 62130 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 62189 || || ||||| || || || || ||||| | |||||||||||||||||| | | | Sbjct 8922 CGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATC 8863 Query 62190 GCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248 || || ||| |||| || || | ||| ||||| ||||| ||||| |||||||| Sbjct 8862 GCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 8804 >seq260686 Length=13603 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 142195 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAAT 142254 |||||||||||||| || | ||||| | || ||||| ||| || ||||| || | Sbjct 5572 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 5513 Query 142255 AGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATA 142314 ||| | || ||||| | ||||||||||| || || || || ||||| || || | Sbjct 5512 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 5453 Query 142315 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142374 || || ||||| || || || || || || ||||| || || |||| ||||| || || Sbjct 5452 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT-GCAGCC 5394 Query 142375 GTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATACCAACGT 142432 | ||| ||| ||||||| | |||| || ||||| | ||| ||| Sbjct 5393 G-GTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 5335 Query 142433 TGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTA 142491 | || |||||||| || || | ||||| || | | ||| | ||| || || |||| Sbjct 5334 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGCGTTA 5276 Query 142492 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGA 142551 || || | | || ||| ||||| | ||| || ||||||||| || || Sbjct 5275 ATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 5216 Query 142552 GTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAA-CTTGATGAGTAGAAACGGCATC 142610 || || | || | ||||||||| || |||| |||| ||| | | || || | ||||| Sbjct 5215 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAG-GTGGAGATCGCATC 5157 Query 142611 ATAAAAACG 142619 || ||||| Sbjct 5156 GTAGAAACG 5148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532718819923200