Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq65234 161 1e-34 seq1462 159 4e-34 seq260686 152 5e-32 seq209331 136 4e-27 seq222524 122 9e-23 seq79071 122 9e-23 >seq65234 Length=1614 Score = 161 bits (178), Expect = 1e-34 Identities = 300/438 (68%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 135792 TTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTG 135851 |||||||| ||||| | |||||||||||||| | | || ||||| | || |||| Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 135852 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCC 135911 || ||||| || | | | |||||| |||| |||||| ||||||||| | | ||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 135912 GCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAG 135971 ||||| || | || || ||||| || || || || || || | || || ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 135972 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 136031 || || ||| || |||||| |||| |||| | ||| | |||| || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 136032 ATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGATTGCATTT 136091 || ||||||||| || || || || || || | || ||| || | |||||| | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 136092 GCTGTTTCGTTGAT-GCCCTGCAATGAGTCATCACTTTCAATCACCACGCACGAACTAAA 136150 | ||| | || || | | ||| | || ||| |||||| | ||| || |||||||| Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAA 1014 Query 136151 TTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATTTGCTTATT 136210 ||| || ||||| || | || || | ||||||||| || || ||||| |||| | | Sbjct 1015 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 1074 Query 136211 CGCAACAGCATTATAAAA 136228 | || ||||||||||| Sbjct 1075 GGAAATTGCATTATAAAA 1092 >seq1462 Length=4781 Score = 159 bits (176), Expect = 4e-34 Identities = 291/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 ||| || || || || |||||||||||||| || ||||| | |||||| |||| || || Sbjct 1446 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 1387 Query 135845 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGA 135903 || || || | || ||| || ||||||| || || |||||||| |||||| | | Sbjct 1386 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 1328 Query 135904 GAGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAAT 135963 | ||||| || || || || | |||||||| ||||| || || ||||| ||||| || | Sbjct 1327 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 1268 Query 135964 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 136022 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 1267 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 1209 Query 136023 TCCGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATG 136082 ||| ||||| ||||| ||||||||||| || || || | || || || | | Sbjct 1208 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 1149 Query 136083 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCAC 136142 || ||| | | || ||||||| | || || ||| || || | |||||| Sbjct 1148 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 1089 Query 136143 GAACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATT 136202 || || ||||| || || || || || || || ||||| || || ||||| | || ||| Sbjct 1088 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 1029 Query 136203 T 136203 | Sbjct 1028 T 1028 >seq260686 Length=13603 Score = 152 bits (168), Expect = 5e-32 Identities = 315/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 135741 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135800 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 135801 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135860 || |||||||| || | |||||| | |||||| |||| || || |||||||| | | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 135861 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135920 || | ||| ||||| | || | ||||||||||||||| | || ||||| || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 135921 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135980 || | ||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 135981 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATAC 136038 ||| || || ||| ||||||| | |||| || ||| || || || Sbjct 5398 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 5341 Query 136039 CAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 136098 | ||||| || ||||| || ||||||| || ||||| | || || | | || Sbjct 5340 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 5281 Query 136099 CGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACGCACGAACTAAATTGTCGT 136157 |||| ||| | ||| | ||| | | ||||||| ||||| || || || || || Sbjct 5280 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 5222 Query 136158 GTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGAT 136201 || || || ||||| || | |||||| || || ||||| || || Sbjct 5221 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 5178 >seq209331 Length=9407 Score = 136 bits (150), Expect = 4e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 53617 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 53676 ||||| || |||| || ||||| || | || || || ||||||| ||| |||||| Sbjct 301 AATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGT 360 Query 53677 CTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 53736 || ||||| ||||||||||| ||||||||||| || |||||||| || ||||| ||| Sbjct 361 GAGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGA 420 Query 53737 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCA 53796 ||||| | |||||||||| |||||| || || ||||||| || | |||||||| Sbjct 421 TGTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCG 480 Query 53797 CCTTC 53801 ||||| Sbjct 481 CCTTC 485 >seq222524 Length=8439 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||| ||||||||||||| || |||||||||||||| ||||| |||| | || || || Sbjct 4034 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 4093 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 ||| || ||||| ||||||||||| || |||||||| || ||||| || || | || || Sbjct 4094 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 4153 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 || || | |||| || || ||||| | |||| ||||||||| || || || Sbjct 4154 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 4210 >seq79071 Length=852 Score = 122 bits (134), Expect = 9e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53619 TTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACT 53678 ||| ||| ||| ||||||||||| | || ||||| |||||||| || || ||||| Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 53679 ATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATG 53738 || || ||||| || || || ||||| || || || |||||||| || || |||||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 53739 TTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACC 53798 || ||| || || || | |||| || || ||||| | |||| |||||| ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 53799 TTCAACA 53805 ||||||| Sbjct 361 TTCAACA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521455149554480