Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq79893 419 7e-113 seq434788 105 2e-18 >seq79893 Length=11432 Score = 419 bits (464), Expect = 7e-113 Identities = 872/1289 (68%), Gaps = 26/1289 (2%) Strand=Plus/Plus Query 9588 ATGAGAGTACTCATGTAATGGGCGATGTAGCATCCTTAGCGGTAGGGTTACACCTGAATG 9647 ||||||| || ||||||||| ||||| || || | ||||| ||| | ||||| || | Sbjct 2080 ATGAGAGCGCTAATGTAATGGCTGATGTTGCTTCGCTTGCGGTCGGGCTGCACCTTAACG 2139 Query 9648 CCGCGAACTTTAAGAGCCAATTGATCAGCGCATATAGCGATGCGCGGAATCAAACACAAA 9707 | || || || || || || || ||||||| ||||||| || ||| | | Sbjct 2140 CGGCCAATTTCAAATCTCAGTTAATTGGCGCATACGGCGATGCTGACAAGCAATCCCGGC 2199 Query 9708 CTTTTAACCGCACAGCACAGCAGGAAGCGaaaaaaaCCGCTGCTTCATTTGATCAGATAG 9767 || ||||||| || ||| | || || |||||||| | | | | | | | ||| Sbjct 2200 AGTTCAACCGCAAGGCGCAGGATGATGCCAAAAAAACTGAGGATGCTTACAAACGGATCA 2259 Query 9768 GCACATCTCTTACCGGCTTGGCAGGACGTATCGCAGGGCTGGCTGGTGTTGGTATATCGC 9827 | | || | || ||| | || || || | ||||| ||||| ||||||||| | |||| Sbjct 2260 GTTCTTCAGTGACGGGCCTTGCCGGGCGGCTGGCAGGTCTGGCAGGTGTTGGTCTGTCGC 2319 Query 9828 TTGGTTCTCTTATC-AG-CATCAATCGGCAGTATGGGCAGTCGCTTTCTGATCTTTCTGC 9885 | || | | ||| || | || ||||||||||| ||| | || ||||| || || || Sbjct 2320 TCGGCACAATCATCCAGACTTCC--CGGCAGTATGGTCAGGCTCTGTCTGACCTCTCCGC 2377 Query 9886 TATCACCGGCGCAACTGGTGCGGAATTGCGCAA---GTATGATGAAGCCGCTCAGGAAAT 9942 |||||||| || || || | | || || | ||||||||||| ||| | || Sbjct 2378 GATCACCGGTGCGACCGGGACCCA---GCTTAAGGCGCTGGATGAAGCCGCACAGCAGAT 2434 Query 9943 GGGGCGGACGACGGAATATAGTGCCAGTCAGGCTGCTGAGTCTATAAAACTCATGGCATC 10002 |||||| || || || || || ||||| ||||| | ||| || | || || ||||| || Sbjct 2435 GGGGCGTACTACTGAGTACAGCGCCAGCCAGGCGGTTGAAGCTCTGAAGCTGATGGCCTC 2494 Query 10003 GGCTAAACCAGAGCTAATGAAAACGTCAGAGGGATTGGTCACC---GCAACTAAAAGCGC 10059 || || || || || || |||| | || || ||||| || ||||| ||||| Sbjct 2495 TGCCAAGCCTGAACTGCTGGAAACAGCTGACGG---TCTCACCCGGGCGACTAACAGCGC 2551 Query 10060 ATTGGTTTTGGCGCAGGCTGCAGGGACCACATTACCTGATGCAACTCGCACACTTGCATT 10119 |||| |||| |||||||| || | ||| ||||| |||||||| || || || | Sbjct 2552 TCTGGTGCTGGCTCAGGCTGCTGGCAGCACCTTACCCGATGCAACCAAAACGCTGGCGCT 2611 Query 10120 GTCATTGAATCAGTTTGGCGCAGGAGCGGAACAAGCAGATCGTTATATTAATGTTCTTGC 10179 ||| |||||||||| || || || ||| | || || ||||| ||||| || ||||| || Sbjct 2612 TTCACTGAATCAGTTCGGGGCCGGTGCGAATCAGGCCGATCGCTATATCAACGTTCTGGC 2671 Query 10180 TGCAGGTGCTAAATATGGTTCATCAGAAATAACTGATACAGCCGATGCCATTAAAAATGG 10239 || || || || ||||| |||| ||||| | ||||| || | ||||| |||||||| Sbjct 2672 CGCTGGCGCGAAGTATGGCGCATCGGAAATTAACGATACTGCGGCCGCCATCAAAAATGG 2731 Query 10240 GGGTGTGGCCGCAGCACAAGCGGGGATCGGGTTTGAGACGTTAAACGCTGCTATTCAGGT 10299 || ||||| || || || || || ||||| ||||| ||| | || ||||| |||||||| Sbjct 2732 CGGCGTGGCAGCTGCGCAGGCAGGTATCGGATTTGAAACGCTCAATGCTGCGATTCAGGT 2791 Query 10300 TCTCGCTGAACGTGAGATTAAAGGTGGTCAGGCCGGTACAGCGCTTCGCAACGTTATACT 10359 || || ||||| || ||||| ||| |||| || ||||| | |||||||| || || Sbjct 2792 CCTGGCATCGCGTGAAATCAAAGGAGGTGAGGCAGGCACAGCTTTGCGCAACGTCATCCT 2851 Query 10360 GACGCTGGAAAAAGGGACAGATCAAAGCCTAAAACCATCAGTTGTTGGACTTAGCCAGGC 10419 | || ||||| || || ||| || || || |||||||| || || | || ||||| Sbjct 2852 CAATCTTGAAAAGGGCACGGATAAATCGCTTAAGCCATCAGTGGTCGGTTTAAGTCAGGC 2911 Query 10420 ATTGGAGAACTTAAGTAATAAAAATCTATCAACAGCACAGGCCGTTAAATTATTTAACGT 10479 | | ||| | ||| || || || || || |||||||| || | || ||| Sbjct 2912 GCTTGGCAACCTCGCAGGTAAGAACCTGTCCACGGCGCAGGCCGTGAAGCTTTTCGGCGT 2971 Query 10480 TGAAAATATTTCTGCTGCTTCTATCCTCGTGGACAATAGAGGAAAAATTAAAGAGCTAGT 10539 |||||| || ||| || |||||||| ||||| || | | || | | || | Sbjct 2972 GGAAAATCTTAATGCCGCATCTATCCTGGTGGATAACCGCAGCAAGCTGGACGAAC---- 3027 Query 10540 TGATGAA----CTCACTGGCACCAATACCGCCTATGAGCAAGCCTCCATCCGGGTTAATA 10595 ||| || || || || || | || || ||||||| ||| |||| || || || | Sbjct 3028 TGACCAAGTCGCTGACGGGAACTCAGACAGCGCATGAGCAGGCCGCCATTCGCGTGAACA 3087 Query 10596 ACCTTAACGGTGATTTAATGGGGTTGACCAGCGCTTTCGAAGGTATGGCTATCAGAGTTG 10655 |||| ||||| ||||| ||||| | |||||||| |||||||| || |||| ||| | Sbjct 3088 ACCTCAACGGCGATTTGATGGGCCTTACCAGCGCCTTCGAAGGATTGATCATCAAAGTGG 3147 Query 10656 GTCAAGCCAGCGGAGGAACATTAAGGTCTGGTGTTCAGAGTGCAACCGAAGCGGTAAATT 10715 | || | || || |||| | || |||||| | || || || | || Sbjct 3148 GGCAGTCTGGCACCGGGCCATTGCGCAGCGGCGTTCAGGGCATTACGGACGCCATTAACG 3207 Query 10716 TTCTTAGTGATAACTTTAACACTGTGGCTAATGTCGCGTTGTATAC-CTTATTACCAGTT 10774 || | ||||| || || || || || ||||||| |||| || |||| | || || Sbjct 3208 GGCTGACGGATAATTTCAATACCGTTGCATCTGTCGCGCTGTACACGCTTA-TCCCTGTG 3266 Query 10775 CTATCTACAAAGCTTACAGCAGGATTACGGGAGAATATTTCTGCGTGGAAGGATAGTTAT 10834 || ||||| || || || || || | || | || |||||||| ||| ||||| | | Sbjct 3267 CTGTCTACGAAACTGACCGCCGGGCTTCGCGGCAACATTTCTGCCTGGGTGGATAATCAG 3326 Query 10835 ACTGCAGTAAAACAAGCTGCTTTACAGCA 10863 | ||||||| | | || || | ||||| Sbjct 3327 AAAGCAGTAAGAAATGCAGCGCTGCAGCA 3355 Score = 233 bits (258), Expect = 6e-57 Identities = 590/886 (67%), Gaps = 37/886 (4%) Strand=Plus/Plus Query 7846 AAATCAGTGGGTTGCAAGAGTTAGAACGGAGACTTATAGCAGTTGGTGAAGAA-GTAGGG 7904 || ||| |||| || |||| | || || | ||||| | | | || |||||| | ||| Sbjct 526 AAGTCACTGGGCTGGCAGAGCTTGAGCGCAAGCTTATCGAACTGGG-GAAGAAAGCAGGC 584 Query 7905 ACTAAAATTCTGCGGGATGCAGGTCGAGCCGCGATGGCAGTAGTAGAAGCGGATATGAAA 7964 || || | |||| ||||| || || || || | || || || || | ||| ||||| Sbjct 585 ACAAAGGTATTGCGAGATGCCGGGCGTGCTGCTCTTGCGGTGGTCGAGGAGGACATGAAG 644 Query 7965 CAAAATGCAGGCTATGACAATAGTTCTACCAATGCTCATATGCGGGACTCGATAAAAATC 8024 || ||||| || |||||||||| || | |||| ||||| ||||| || |||||| Sbjct 645 CAGAATGCGGGTTATGACAATACCGCTGCAGGCCCTCACATGCGAGACTCCATCAAAATC 704 Query 8025 AGATC---ATCCCGAGGAAAAGCAGGTAGCA---CAGTAGTTGTGCTGCGTGTAGGACCT 8078 | || | |||| | | || ||| | ||||| || | || || || || Sbjct 705 CGCTCTACAACCCGCG------CTCGTGGCAATGCCGTAGTGGTTTTACGCGTTGGCCCG 758 Query 8079 ACCCGAAGCCACTATATGAAGGCGTTAGCTCAAGAGTTTGGCACTATAAAACAGGTTGCT 8138 | | | || ||||| || ||| | || || || |||||||| | || || || || Sbjct 759 AGCAAACAGCATTATATCAAAGCGCTGGCGCAGGA-TTTGGCACGGTTAAGCAAGTGCCT 817 Query 8139 AAACCATTTATCCGCCCTGCATTGGACTACAACAAAATGCAGGTTCTTCGCATTCTCACC 8198 ||| ||||| ||||| ||| |||| |||||||| | | || ||||||||||| | Sbjct 818 TCACCCTTTATTCGCCCGGCACTGGATTACAACAAGGCGAAAGTCCTTCGCATTCTGGCG 877 Query 8199 GTTGAAATCCGTGATGGG---TTAAGCACCCTTAGCCGGTAGCATTCTGCTGCCTCATTT 8255 ||||||||||| ||| | |||| || | |||||| | | |||||| |||| Sbjct 878 GTTGAAATCCGCGATCGCATTTTAAACAACG------GGTAGCGTCC-GCTGCC--ATTT 928 Query 8256 ACCTATTAAAAAAGAGAGAAATATATGGCTGGAAA---ATCCTCGCCAGAATACGCCATG 8312 | || | ||||| ||| | ||||||| || | | ||||| |||||||| ||| Sbjct 929 ATCTG-----AGAGAGAAAAA-ACATGGCTGATAACAAAACTTCGCCGGAATACGCGATG 982 Query 8313 CTCCCAGCTGGGGTTGTTGTTAAATGGGGTGCTGTTGGCGATACCTCCTTAACAATGAAG 8372 || || || || || ||||| | ||| | |||| | || | ||||| Sbjct 983 CTGCCTGCGGGTACCGTGGTTAAGTATGGTCCATCCGGCGCTGAAGTCTCCGCGATGAAA 1042 Query 8373 CCGTTGGTTAACTGTAAGGCTGTTGGTGCTACTGGTTTAACTGGTGGCTATGTAGATTGC 8432 ||| || ||||||||||||| | || ||||| || || || | || || ||| Sbjct 1043 CCGCTGATTAACTGTAAGGCGCTGGGCGCTACCGGGCAGACGGGCATTTC-GTGGACTGC 1101 Query 8433 ACTACTTTAATCGATACGAATAAACAGTCTATTTCTGATTTGCCTGAAGGACCTGAAAAA 8492 || || | || ||||| | || |||| |||||| ||| |||||||||| |||||||| Sbjct 1102 ACCACGCTGATTGATACCAGCAAGCAGTTTATTTCCGATCTGCCTGAAGGCCCTGAAAAG 1161 Query 8493 TCTTTAGGGTTTATTGACGATCCGGAAAATGAAGATTTTGCGGCATTGCTTACCGCCGCA 8552 || | || || |||||||||||| ||| ||| ||||||| || || || | ||| || Sbjct 1162 TCGCTGGGCTTCATTGACGATCCGTCAAACGAAAATTTTGCTGCCTTCCTGAACGCGGCT 1221 Query 8553 GCTGCACGTGAGACTGTACAGTTTTATATGGAATTGCCGAATGGCCGTACAGCCACGCAA 8612 ||||| || || ||||| || | || |||| || || || || || | Sbjct 1222 CAAAACCGTGAAACGGTTCAGTTCTACGTTGAGCTGCCAAACGGTCGCACCGCGAATATG 1281 Query 8613 ATATTAGCGCTTTCAGGTTGGCAGTTGGCCGAGGTTTCTGCCCCTGCAAATGAAGTGATC 8672 || | |||||||| || |||||| || || | | || || || | ||||| || Sbjct 1282 ATTCTGGCGCTTTCTGGCTGGCAGATGAATGAAATCACCGCGCCAGCGAGCGAAGTTATT 1341 Query 8673 CAGATAGAGGTTAAGGGTAAGCAAAATAATATTGTATGGGGAACCG 8718 ||||| || |||| || || || |||||||| ||||| |||| Sbjct 1342 CAGATCACCGTCCAGGGCAAACAGAACAATATTGTCTGGGGTACCG 1387 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9352 GAGGAAGCGGaaaaaaaCTAA-CAGACTCGCCCTGGCTAAAGTTAATTTTTCAGCTTGCA 9410 || || ||||||||||||||| ||| |||||||||||| || | ||||| ||| || Sbjct 1817 GAAGATGCGGAAAAAAACTAAGCAG-CTCGCCCTGGCTTGAGCTGATTTTCTGGCTGGCC 1875 Query 9411 GATCGCTGGGGCGAGCCTGATCCGCGC-AAAATAGCGGAACTGCCGGTTCATATTATTAT 9469 |||||||||||||||||||| || ||| ||||| || | |||| || ||| | | Sbjct 1876 GATCGCTGGGGCGAGCCTGA-CCCCGCAAAAATTGCCGCCTTGCCCGTCGATACGCTAAA 1934 Query 9470 GCACTGGCAGGCATTTTT 9487 |||||| ||||||| || Sbjct 1935 TCACTGGAAGGCATTCTT 1952 >seq434788 Length=274 Score = 105 bits (116), Expect = 2e-18 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 23723 ATGGCAGTCCAGGCGGAGCAGCTTTCGAGCTGGCCGGTATCCGTTGGGGCCGGTATTCCT 23782 |||| | || ||||| ||||| |||| |||||||||| | | ||| ||||||||||||| Sbjct 204 ATGGTGGCCCGGGCGGGGCAGCCTTCGGGCTGGCCGGTGTTCATTGAGGCCGGTATTCCT 145 Query 23783 ACCTCCGTTTGGGCTGCCACCCCATAGAGTGTAGGAACTCTGGTGGTAGC 23832 ||| |||| ||||| ||| ||||| |||||||||||||| |||||| || Sbjct 144 ACCCCCGTCCGGGCTACCA-CCCAT-GAGTGTAGGAACTCCGGTGGTGGC 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147284851602202