Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq260686 145 1e-29 seq65234 113 7e-20 seq498467 100 4e-16 seq56965 86.0 1e-11 >seq260686 Length=13603 Score = 145 bits (160), Expect = 1e-29 Identities = 275/401 (69%), Gaps = 8/401 (2%) Strand=Plus/Plus Query 147148 TTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCAATTTAGCTCGT 147207 ||||||| || || || |||||| | ||||| || |||||||| || || || ||||| | Sbjct 5179 TTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCT 5238 Query 147208 GTGTGAAAATCGAATCTGGCGACTCGCTGCGTTCGATCAACAAGGTATCTGAAGCT--AT 147265 | || || || | |||||| || ||| || ||| | | || ||| || Sbjct 5239 GCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAAC--GCCACCTCCAGCGCGAT 5296 Query 147266 CGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAATTCGAGCAGA 147325 || | ||| || | | ||||| ||||| ||| | |||| ||| || || || Sbjct 5297 TGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCT 5356 Query 147326 GGGTTCGGTTGTACGTGCGGGTGAA--ATTCGTCACACTGGCGTAATTCCTTTCTGGAAA 147383 ||| | || | |||||| |||| ||||| ||| ||||| |||| || Sbjct 5357 GGGCAGCCCGATCCGCGGCGGTGAAGCATTC--CACACCGGCTGCATTCCGTTCTATAAG 5414 Query 147384 CACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTGCTGCGACT 147443 ||||| ||||| ||||| || || || ||||| || || || || |||||||| ||||| Sbjct 5415 CACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACC 5474 Query 147444 CTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGAACAACAAA 147503 ||| ||||| || ||||| | ||||| |||| || || || |||||||||||| Sbjct 5475 CTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGC 5534 Query 147504 GGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGT 147544 || ||||||| ||||| | |||||| | |||||| |||| Sbjct 5535 GGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGT 5575 >seq65234 Length=1614 Score = 113 bits (124), Expect = 7e-20 Identities = 283/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 147119 CTTTTATAACGCTGTTTCAACTCAAAAACTTTCGCTACCTACACCGATTATGGCAGGCGT 147178 ||||||||| || |||| ||| ||| | || ||||| |||||||||||| |||| || Sbjct 1093 CTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGT 1034 Query 147179 TCGTACCCCGACACGTCAATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCG 147238 | || || || ||||||||||| || |||||| ||| |||| || || | Sbjct 1033 AAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAA 974 Query 147239 TTCGATCAACAAGGTATCTGAAGCTATCGTTGATTACATTAGTAAACGTGCGGGTATTGG 147298 || || || | || || || || | || || | |||| || || || || Sbjct 973 CTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGG 914 Query 147299 CGTAAACGGTGGTGCAATTCGAGCAG-AGG--GTTCGGTTGTACGTGCGGGTGAA--ATT 147353 | | |||| |||| ||||||||| ||| || | | | || | ||| ||| Sbjct 913 CATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATG---GAGAAGCATT 857 Query 147354 CGTCACACTGGCGTAATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCT 147413 ||| || || |||||||| | |||||||| || | || || ||||| |||||| Sbjct 856 --TCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCT 799 Query 147414 CAAGGTGGTGTACGTGGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTA 147473 |||||||| || | || || || || ||| | |||||| || ||||| ||||| | Sbjct 798 CAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATT 739 Query 147474 GAAAAGCTTCTTGTTCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTT 147533 ||||| | | ||| | || || || | ||| ||||||| || | | ||||||||| Sbjct 738 GAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTT 679 Query 147534 GACTA 147538 || || Sbjct 678 GATTA 674 >seq498467 Length=2746 Score = 100 bits (110), Expect = 4e-16 Identities = 223/335 (67%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 8894 TGGAAAGAACTGACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGT 8953 ||||| || ||| | |||||| ||||| || ||||||||||| |||||| || || Sbjct 808 TGGAAGGAGGAGACCGACTACGGCTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 749 Query 8954 GATCGTTTCTGTCGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAA 9013 || || ||||| || ||||| | ||| || | | |||| ||| ||||||| Sbjct 748 GACCGCTTCTGCCGCCTCGACGCCGCCGAATTTGGCGTGGTGCCGGGCGTCACCGACAAA 689 Query 9014 GACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAG 9073 | || ||||| ||| || ||| | || || || || || ||||||| ||| || Sbjct 688 GGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATCCGTACGACAAA 629 Query 9074 ATTGATTTCGAAGCAGCATACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAA 9133 || || || ||||| | || || || || || ||||| |||||||| | || Sbjct 628 ATCGACTTTGAAGCGGGCTATCCGCCGATCGCCAACGGCGGTTTTATCTGCTACGGCGAG 569 Query 9134 TTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAG 9193 | |||||| || | | ||| | || | || ||| ||| ||||||||| || | Sbjct 568 TACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATTACAGCTACAGC 509 Query 9194 AAAGTTGCGTACTTCGGCACAAACACGCCGATTGA 9228 || | || | |||||| ||||| |||||||| Sbjct 508 CGCGTGCCCTATTACGGCACCAACACCCCGATTGA 474 >seq56965 Length=1110 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 70975 TGTGAGCATCACATCGTAACAATCGACGGCTTTGCCACTGTCGCATACATTCCGAAGAAC 71034 ||||| || ||| | || | ||||| ||| || || ||||| |||||||| || | Sbjct 312 TGTGAACACCACTTTGTGATCATCGATGGCAAAGCGACCGTCGCCTACATTCCCAAAGAA 371 Query 71035 AAAGTTCTTGGTCTGTCGAAAATGAATCGCATCGTTGAGTACTTCGCTCGTCGTCCGCAG 71094 || || |||| ||||||||||| || || ||||| ||| |||||| | || |||||| Sbjct 372 AAGGTGATTGGCCTGTCGAAAATCAACCGTATCGTGCAGTTCTTCGCCCAGCGCCCGCAG 431 Query 71095 ATTCAAGAACGTCTGAC 71111 | || || |||||||| Sbjct 432 GTGCAGGAGCGTCTGAC 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778452547781040