Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq48110 145 8e-30 seq79071 132 5e-26 seq222524 105 7e-18 seq213154 105 7e-18 seq209331 105 7e-18 seq95872 98.7 1e-15 seq213894 84.2 2e-11 >seq48110 Length=2021 Score = 145 bits (160), Expect = 8e-30 Identities = 193/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| || || || ||| ||| | ||| | |||| | ||| ||||||| | Sbjct 687 CCGTGAGTCAGGTGCCCACCGTGCGCCAGGTTCATCCCCAGAATAGTATCGCCCGGCTGC 746 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || ||||| |||||| || ||| || || ||||| || || || || ||||| ||| Sbjct 747 AGCAGTGCGGTGTAAACCGCAAAGTTAGCCTGAGAACCTGAGTGTGGCTGCACGTTAGCG 806 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT---CGATTTCATCG 7114 ||| | || |||||||||||| || || ||||||||||| | || |||| ||| || Sbjct 807 TAATCGGCACCAAACAGTTCTTTTGCGCGATCAATTGCCAGCTGCTCAACGATATCAACG 866 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | | |||||||| || || |||||||||||||| || ||||| || || ||||| Sbjct 867 ---TACTCACAGCCGCCGTAGTAGCGTTTGCCCGGATAGCCTTCAGCGTATTTATTGGTG 923 Query 7175 AAAATAGAACCCTGTGCTTTCATAACA 7201 | |||||| ||||| | ||||||| Sbjct 924 AGCTGAGAACCTTGTGCCTGCATAACA 950 >seq79071 Length=852 Score = 132 bits (146), Expect = 5e-26 Identities = 144/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 |||||| || || || || || || |||||||| || || |||||||| || | || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGA-- 66056 ||||| || |||||||| || ||||||||||| || || || ||||| ||||| ||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 66057 -TTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACC 66115 ||||| |||||||||||| || | || ||||| || ||||| |||||||| || Sbjct 301 TTTAAC---TGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCC 357 Query 66116 ACCTTCAACA 66125 |||||||||| Sbjct 358 ACCTTCAACA 367 >seq222524 Length=8439 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||||||| || || || || ||||| || ||||| || || || || || || || | Sbjct 4025 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 4084 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATT 66058 ||||| || ||||||||||||||||| || ||||| || || |||||||| || || | Sbjct 4085 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 4144 Query 66059 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || |||||||| || | ||| || || || ||||| ||||||||||| || Sbjct 4145 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 4204 Query 66119 TTCAAC 66124 || || Sbjct 4205 CTCCAC 4210 >seq213154 Length=3368 Score = 105 bits (116), Expect = 7e-18 Identities = 212/303 (70%), Gaps = 16/303 (5%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||||||||| |||||||| ||| | |||| | |||| | || || || | Sbjct 405 CCGTGAGTGAGGTGGCCGCCATGAGCCAGGTTCATACCCAGAATAGTGTCGCCTGGGGTT 464 Query 6998 AGGAGTGCTTGGTAAAC-TGCC-TGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTG 7055 | || || ||||||| ||| ||| ||||| || || || ||||| |||||||| | Sbjct 465 AACAGGGC--GGTAAACACGCCGAAGTTAGCTTGAGAGCCTGAGTGAGGCTGAACGTTAG 522 Query 7056 CGAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAG--GTTCT-CGATTTCA 7111 || ||| ||| || || | |||| ||||| ||||| ||||| ||||| |||| ||| Sbjct 523 CGTAATCTGC-ACCGAATAACGCTTTTGCACGGTCAATCGCCAGTTGTTCTACGATATCA 581 Query 7112 TCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTG 7171 || | | |||| || ||||| || || |||||||| || || || || ||||| ||| Sbjct 582 ACG---TATTCGCAACCACCATAGTAACGCTTGCCCGGGTAACCTTCGGCGTACTTATTG 638 Query 7172 GTAAAAATAGAACCCTGTGCTTTCATAACA--TCGTCTGACACATAGTTTTCGGACGCAA 7229 || | || || || |||| ||||||| | | ||| |||||||| || |||| Sbjct 639 GTCAGTTGTGATCCTTGCGCTTCCATAACACGTGGACTG--GTGTAGTTTTCTGAAGCAA 696 Query 7230 TCA 7232 ||| Sbjct 697 TCA 699 >seq209331 Length=9407 Score = 105 bits (116), Expect = 7e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||| || |||| ||||| ||||| || || || ||| | || || || ||| | || Sbjct 303 TTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGA 362 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATT 66058 |||||||| || || ||||||||||| || ||||| || || |||||||| ||||||| Sbjct 363 GTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATG 422 Query 66059 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || || || ||| | | |||| | ||| || |||||||| |||||||| || Sbjct 423 TTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCC 482 Query 66119 TTC 66121 ||| Sbjct 483 TTC 485 >seq95872 Length=52327 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| || || || ||| ||| | ||| | |||| | || ||||||| | Sbjct 30578 CCGTGAGTCAGGTGACCACCGTGTGCCAGGTTCATCCCCAGAATGGTGTCGCCCGGCTGC 30637 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || ||| || || ||| || || |||||||| || || || ||||| || Sbjct 30638 AGCAGCGCGGTGTAGACCGCGAAGTTAGCCTGGGAACCGGAGTGCGGCTGCACGTTGGCA 30697 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | || ||||| |||| ||||| ||||| ||||| | ||| | |||| | Sbjct 30698 TAGTCAGCACCGAACAGCGCTTTGGCACGATCAATAGCCAGCTGCTCAACGATATCGACG 30757 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | ||||||| || || || || ||||||||||| || ||||| || |||||||| | Sbjct 30758 TACTCGCAGCCACCGTAGTAGCGCTTGCCCGGATAGCCTTCAGCGTATTTGTTGGTCAGC 30817 Query 7178 ATAGAACCCTGTGCTTTCATAA--CATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 || ||||| || | ||| | | | | ||| |||||||| || ||||||| Sbjct 30818 TGCGATCCCTGAGCCTGCATCACGCGTGGGCTG--GTGTAGTTTTCTGAAGCAATCA 30872 >seq213894 Length=28734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 65949 TGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGT 66008 || ||||| || || ||||| || ||| | || || || ||| | | || |||||| Sbjct 8979 TGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAGCGT 8920 Query 66009 ACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCA 66068 || ||||| || || || || ||||||| || ||||||||||| || | | || | Sbjct 8919 ACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCG-- 8862 Query 66069 TCTTCCAG-GGTATTT--CGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAA 66123 ||||||| | |||| |||| | || || |||||||| |||||||| ||||||| Sbjct 8861 -CTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAA 8805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551897587849160