Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq1462 203 5e-47 seq260686 172 8e-38 seq498467 165 1e-35 seq15764 116 5e-21 >seq1462 Length=4781 Score = 203 bits (224), Expect = 5e-47 Identities = 318/455 (70%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 43573 TGGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGAT 43632 |||||| || |||| ||||| | || | ||| |||||| | | | || |||||||| Sbjct 1491 TGGACTGAATAGCGAGATATCGCCGCCTTTTACCAGACGTTGATACATGAGTTTGTTGAT 1432 Query 43633 TTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAG 43692 ||| | ||||| || || || || | || || |||| || || ||| |||||||| Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 43693 AACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACC 43752 || | | |||||| ||| | |||||||| || || | || || || || || || Sbjct 1371 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 1312 Query 43753 GCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAAT 43812 |||||| || || || |||||| ||| || || |||||||| | ||| ||||||| || Sbjct 1311 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 1252 Query 43813 AATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCC 43872 | ||| || ||| | ||||||||| || || | ||| ||||||||| ||| Sbjct 1251 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 1192 Query 43873 ACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGC 43932 | | ||||||||||| || ||||||| || || | |||||| | ||| | || || Sbjct 1191 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 1132 Query 43933 GTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGT 43992 ||| || || | ||||| | ||||| |||||||||||| || |||||||| Sbjct 1131 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 1072 Query 43993 CGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027 ||| || || || ||||| | |||||||| |||| Sbjct 1071 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTA 1037 Score = 107 bits (118), Expect = 3e-18 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 40659 GCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGAATCAG---ATAC 40715 || ||||| | |||||| | ||||||||| | | || |||| || | || || | Sbjct 3582 GCAATCTCTTTCATTTCCGGATCATCTTCACCGCTTCGC--AGCA-GATTTAGCATATGC 3526 Query 40716 TGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTTG 40775 || || || ||||||| || ||| ||||| || || ||||| |||||||| || || Sbjct 3525 TGTGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTA 3466 Query 40776 CCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACGA 40835 |||||||| | ||||||| |||| | ||| | ||||||||||| || ||||||||| Sbjct 3465 CCTTCCATCAGCTCACGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACGA 3406 Query 40836 ATCGCTTCCAAAGCGTTTACG 40856 || ||||| | || || ||| Sbjct 3405 ATGGCTTCGAGGGCATTGACG 3385 >seq260686 Length=13603 Score = 172 bits (190), Expect = 8e-38 Identities = 285/409 (70%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 43621 CAGCTTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTT 43680 ||||||||| | || | |||||||| | || || | || || |||| ||||| Sbjct 5591 CAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCG 5532 Query 43681 GTTGTTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGT 43740 |||||| ||||| || || | |||| ||||| |||||||||||||| ||| | || || Sbjct 5531 GTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGT 5472 Query 43741 AGCAGCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTT 43800 || || || ||||| || || ||||| ||||| || ||||| |||||||| | || Sbjct 5471 CGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTT 5412 Query 43801 CCAGAACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGC 43860 |||||||||| || |||||| ||||||| | || || | || || Sbjct 5411 ATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGC 5352 Query 43861 ACGAATAGCG-CCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTG 43919 ||| || ||| || |||| || |||||||| || || | || || | || || | Sbjct 5351 ACGGAT-GCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG 5293 Query 43920 AACTTGCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGC 43979 || | ||| ||||||||| ||| || |||||||| || ||| ||||| |||| Sbjct 5292 CGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGC 5233 Query 43980 TAAACTGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 | |||||||| |||||||| || || || | | |||||||||||| || Sbjct 5232 TGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 5184 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 40655 TTTGGCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGA--ATCAGA 40712 ||| || |||||| |||||| | ||| ||||| || |||| |||| | | || | Sbjct 7743 TTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCA--CTGCGCAGCAGGTTCAGCATA 7686 Query 40713 TACTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCG 40772 | ||| ||||| ||||||| || |||||| || || ||||| ||||| || || Sbjct 7685 TGCTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGCGATCAGCTTAATGATTTTGGCA 7626 Query 40773 TTGCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAA 40832 ||||||||||| | | ||||| | || | ||| | ||| || ||||| || || || Sbjct 7625 TTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGAGCAGGCGAAGCTGACGTAAAAG 7566 Query 40833 CGAATCGCTTCCAAAGCGTTTACG 40856 || |||||||||| ||||| ||| Sbjct 7565 CGGATCGCTTCCAGCGCGTTGACG 7542 >seq498467 Length=2746 Score = 165 bits (182), Expect = 1e-35 Identities = 617/957 (64%), Gaps = 14/957 (1%) Strand=Plus/Plus Query 37822 TCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAGA 37881 ||||| ||| ||||||| || | | || ||| || || || || || |||||||| Sbjct 1107 TCCAGCAGCGCCCAGAAGCGTGTCTCATCGCCACCCGCTTCCAGGGCAATGCGCGGCAGG 1166 Query 37882 TTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCCATTTTCGTCT 37941 || || ||| || || | |||||| || || ||||| | | | || || || | Sbjct 1167 TTGAGGCTAATCACGCCAATATTATTGCGCCCCTCGTGGATCTGTTCCCCGTTCTCCTGA 1226 Query 37942 TCCCAACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAGCTGCCAGTTGTTTCA 38001 | | ||| | | ||| |||||||| ||||| || ||||| || || | Sbjct 1227 TAC--ACGCCG-AGGAAGCTGCGGCAGCCCATTGGCGTTTTAAACGAACCGGTGACCTGC 1283 Query 38002 ACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCAGTGCC 38061 || || | |||||| | || ||||| || ||||| || ||| ||||||||||| ||| Sbjct 1284 ACCACCTGGTCATAATTGAGGATATCGGGGTACATGCGTTTACTGGCGCACTCCAGCGCC 1343 Query 38062 AGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGTCTTTCAGAGCA 38121 || || |||||| ||| || || | ||| | ||| |||| | || Sbjct 1344 AGCTGTTTGATATCGTAATTTGGCTCGCCGCGACGGTGGTTCAGCCCGGCTTTGATGGCG 1403 Query 38122 AACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTCGAACT 38181 |||||||| || || ||||| | ||| | | ||| || || || || | || Sbjct 1404 AACACCAGCTTGGGAAACACGGCAGTTTTGTGATTTTTACCCAGCCCGGCGATGCGGTTA 1463 Query 38182 TTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGCCGAAT 38241 || ||||| | ||| || || ||| ||||||| || || || |||||||| Sbjct 1464 CGCAGGATCGACTGCTGGATAAGGCGCGCTGCCCAGCTGGTGCCGAGGCCGAAGCCGAAG 1523 Query 38242 GT-ACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCGAGTCC 38300 || ||| || || || || ||||| |||| ||| || || || ||||| || || || Sbjct 1524 GTGACA-AACGGCGTCTGGCCGTTGGCGGTGTGCAGCGTATTGACCTCATACTCCAGCGA 1582 Query 38301 CTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGTATTCTTTCGCATCTG 38359 ||| | || || || ||| |||| | || || || || ||| || || | Sbjct 1583 CTGAAAGGCGTCGTAGCACT-CTTTTTCGGTGCGCGCGCGGGCATAGGCTTCGGCGTCGG 1641 Query 38360 GAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGT--CATCTTAACATACGG 38417 ||| | ||| | ||| | | || ||| | | | |||| || |||| Sbjct 1642 CAATCTGCCATTCGTCGGCGGTGGCGCGGTGTTTTGCCAGGCTGGCATCC--ACGAACGG 1699 Query 38418 TGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTACTTG 38477 ||||||||||| |||||||| ||||| ||| |||| |||||||| || || || || || Sbjct 1700 CGCCAGCACTTCATCAATACGGTTAATGGTGGTGCCCCCGTAAATATGGCTGGCGACCTG 1759 Query 38478 CGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGATCTG 38537 || || ||||| ||| ||||| | ||||| || || || || | |||||||| Sbjct 1760 GGCGATGATCTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTCGATCTC 1819 Query 38538 TGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAACATGCAGTT 38597 || || ||||| ||| ||| | | |||||| | || |||| ||||||||| Sbjct 1820 GGCGTTACCCATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCATGCAGTT 1879 Query 38598 AAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGCCTTTTTCGTG 38657 |||||| ||||| || || || ||||| ||||| || |||| | | ||| || || Sbjct 1880 AAACATCGGGAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGATCTCGCCGCGCTCATG 1939 Query 38658 TGCTTGCATAACTTCAACAGGAAGATAATGCT---TTGCAAAGTGCTTACTAACAATACC 38714 || | || ||| || || ||||| || |||| || || || || Sbjct 1940 GGCGCTGACCACATCACGCGGCAGCATATGCTGACGGGCGTAGTGTTTGGCGACGATCCC 1999 Query 38715 AGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCATTCTCATT 38771 || | ||||||||| ||||| ||||| || || || || || ||||| ||||| Sbjct 2000 GGCCAGCAGATCGCGCTGAGTGGGGATCACCTTGCTATCCTTATTGGCATTTTCATT 2056 >seq15764 Length=1899 Score = 116 bits (128), Expect = 5e-21 Identities = 148/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 40659 GCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGAATCAGA---TAC 40715 || ||||| | ||| || | ||| ||||| | |||| |||| || |||| | | Sbjct 1343 GCAATCTCTTTCATCTCCGGATCGTCTTCACCG--CTGCGCAGCA-GATTCAGCATGTGC 1287 Query 40716 TGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTTG 40775 |||||||| ||||||| ||| |||||| || |||||||| ||||| || || ||| Sbjct 1286 TGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATTG 1227 Query 40776 CCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACGA 40835 |||||||| | |||||||| |||| | ||| | || || ||||| ||||||||||| Sbjct 1226 CCTTCCATCAGCTCACGCTCAGCGAACGCGAATGAACAGGCGAAGCTGACATAGAAACGG 1167 Query 40836 ATCGCTTCCAAAGCGTTTACG 40856 |||||||||| || || ||| Sbjct 1166 ATCGCTTCCAGCGCATTGACG 1146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741564186325040