Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq189152 140 7e-28 seq175940 109 1e-18 seq220070 104 5e-17 seq46862 102 2e-16 seq141175 100 7e-16 seq248630 98.7 2e-15 seq46279 98.7 2e-15 >seq189152 Length=79535 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| || ||||| || |||||||| || || |||| | || | || || Sbjct 37562 AGGACTAGATGAAAAGTAGACTCCTTCTGAATGTTGTAATCAGCCAATGTACGCCCATCC 37621 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || |||||||||||||| || || || || || || ||| Sbjct 37622 TCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGATCTGGTGGGATACCCTCCTTGTCC 37681 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||||| || ||||| || | ||| | | || |||||||| || || ||| Sbjct 37682 TGGATCTTTGCCTTGACATTGTCGATGGTGCCCGAACTCTCAACCTCTAGAGTTATGGTC 37741 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| |||||||| Sbjct 37742 TTCCCGGTAAGAGTTTTCACAAAGATCTGCAT 37773 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| || || | | ||| | | || || || || |||||| Sbjct 37349 GTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCA 37408 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || |||||||||||||| ||||| || || Sbjct 37409 GCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTC 37468 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || || || || || || ||||| || || ||||| Sbjct 37469 ACATTATCAATGGTGTCG-GAGCTCTCAACTTCAAGAGTGATGGTCTTTCCGGTTAGTGT 37527 Query 104542 TTTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 37528 CTTGACAAATATCTGCAT 37545 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | ||||| || || || || || || || Sbjct 37772 ATCCCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCG 37831 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || ||||| || || |||||||| || ||||||||||| || ||| Sbjct 37832 GCCAATGTCCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGA 37891 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| ||||| ||||| || | |||||| | || Sbjct 37892 GGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCG 37951 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 37952 ACCTCAAGAGTGATAGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 38001 >seq175940 Length=99262 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 58153 ATACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 58094 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || || || || |||||||| || || | ||| || || || Sbjct 58093 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGT 58034 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || || || | ||| ||| | || Sbjct 58033 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGATGACTCG 57974 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || |||||||||||||| Sbjct 57973 ACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTAACAAATATCTGCAT 57924 >seq220070 Length=14372 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || || ||||| || || || || ||| Sbjct 170 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCA 229 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| || ||||| || Sbjct 230 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTG 289 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || ||||| || || || ||||| || || | ||| Sbjct 290 ACGTTGTCAATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCTGTCAATGTC 349 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 350 TTCACAAATATCTGCAT 366 >seq46862 Length=45342 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 22792 TTCCACCCCTAAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAG 22851 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || ||||| | || ||||| |||||||||||||| || ||||| |||| Sbjct 22852 CTAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAAATTAGCCTTTGCTGATCTGGAG 22911 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 22912 GAATGCCCTCCTTGTCCTGAA 22932 >seq141175 Length=38247 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | || || || ||||| || || ||||| | || || | Sbjct 25916 AGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGG 25857 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || ||||| || || || | ||| || || || || || || || Sbjct 25856 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCCTCC 25797 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||| ||||| || || ||||| || | ||| || | ||| || ||||| || || Sbjct 25796 TTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTC-CGAGGACTCAACCTCGAGGGT 25738 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||||||||| Sbjct 25737 GATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 25699 >seq248630 Length=92124 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || || |||| ||||| || || || ||||| || || Sbjct 18073 GTGGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGTGTCCATCCTCAAGTTGCTTGCCG 18132 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||| || || || || || || || || || || ||||| |||| Sbjct 18133 GCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTCACTTTG 18192 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| || || || ||||| | || || || Sbjct 18193 ACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTGTCGGTGAGGGTC 18252 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 18253 TTCACAAAGATTTGCAT 18269 >seq46279 Length=115318 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 104329 TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 || |||| || || ||||| || || | ||| | ||| || ||||| ||||| || |||| Sbjct 66872 TAGTCCCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCTTTTTGAATGTTGTAGT 66813 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 ||| || || | || ||||| || || |||||||||||||||| ||| || || || | Sbjct 66812 CAGCTAATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAACCTTTGCTGGTCTG 66753 Query 104448 GAGGTATTCCTTCTTTATCCTGAATC 104473 | || || ||||| || ||||| ||| Sbjct 66752 GCGGGATGCCTTCCTTGTCCTGCATC 66727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144033746035468