Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq282038 104 2e-17 seq36532 91.5 1e-13 >seq282038 Length=87643 Score = 104 bits (114), Expect = 2e-17 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| |||||||| || || || | || | | || |||| ||| | ||||||| Sbjct 46835 ACGCCGGTGGACCCAAACCCTCCCTCCCCACGGACGGTGGCGTCGAGGTCCTCCACCTCG 46894 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | | ||| || |||| || | ||||| ||| || | ||||| || | ||| Sbjct 46895 GCGATATCCGGCGTCGCAATCACCTGGATGATCATCTGTGCAACGCGGTCACCGGGCTTC 46954 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 || | || || | |||| |||||| ||||| || |||||| |||||| |||| Sbjct 46955 ACGGCAAAGTCCACCT--CCGAGTGGTTGAAGAGCACGACACCCACGGGGCCGCGATAGT 47012 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 | ||||| ||||| || ||||||||||||||| ||||||| | ||||||||| || Sbjct 47013 CAGCGTCGATCACCCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGGCCCGA 47067 >seq36532 Length=172957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAA 5649 || ||||||||| | | ||| | | ||| || |||| ||| | | | |||||| Sbjct 9117 GACCAGCTGCGCCACGCAGTCCCTGGGCTTCACGGCGAAGTCGACGCCGGAGTGGTTGAA 9176 Query 5650 CAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGAT 5709 || | ||||| ||| |||| |||||||||||||| | ||||||||||||||||||||| Sbjct 9177 GAGGATGACGCCGACGGTGCCCCGGTAGTCGGCGTCCACCACGCCCGCGCCCACGTCGAT 9236 Query 5710 GAAGTGCTTGACCGCCAG 5727 | ||| ||| |||||| Sbjct 9237 GGAGTACTTCCACGCCAG 9254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427437838963352