Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq136258 150 7e-32 seq497144 123 1e-23 seq410746 82.4 3e-11 >seq136258 Length=1331 Score = 150 bits (166), Expect = 7e-32 Identities = 235/336 (70%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 ||| || |||| |||||| | ||| | || ||||| || |||||| |||| | || Sbjct 16 GCCACCCAGCATCTGCATGGTACCGCCAACGTTAACCACGACTTCGGTGGTGTAACGCTC 75 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 |||||| |||| ||||||| || |||||||| || ||||||||| |||||||| || Sbjct 76 CTGGCCACCCTGATCCTGCCATTTACGGGTGCGCAGCTGGCCTTCGATATAGACCTGCGA 135 Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343 || ||| |||||||| | |||| ||| ||||| |||||| || || || ||||| Sbjct 136 CCCTTTTTTCAGGTATTCACCCGCGACTTCAGCCAGTTTGCCAAACAGAACCACACGGTG 195 Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403 ||| || ||| ||| | | | |||||||||||||| ||||||||| || || Sbjct 196 CCATTCAGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTTTCCGACGTAGC 255 Query 11404 CAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCC 11463 ||| | | | || || || || || || | | | | || |||||||| || Sbjct 256 CAGCGTAATGTTGGCAACAGCGCCACCATTTGGCATATAACGTACTTCCGGATCCTGACC 315 Query 11464 CAGATGGCCGACCAGGATTACCTTGTTCACTCCGCG 11499 ||||| ||||| || || || ||||| || || || Sbjct 316 CAGATTCCCGACAAGAATCACTTTGTTAACGCCACG 351 >seq497144 Length=1636 Score = 123 bits (136), Expect = 1e-23 Identities = 229/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTCC 11224 ||||| |||| |||||| ||||| | || ||||| || |||||| |||| | || Sbjct 1450 CCGCCCAGCATCTGCATGGTGCCGCCAACGTTAACCACAACTTCGGTGGTGTACTTCTCA 1391 Query 11225 TGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAG 11284 ||| ||||| | ||| || ||||| | || ||||||||| || ||||| ||| Sbjct 1390 ACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTGAGAG 1331 Query 11285 CCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGC 11344 || || |||||||||| | || | ||| |||||| ||| || ||||| || |||||| Sbjct 1330 CCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCGGTGC 1271 Query 11345 CACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCC 11404 || || || ||| | | ||||||||||||||| |||| |||| || ||| Sbjct 1270 CATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGTAGCC 1211 Query 11405 AGACTGAGGGAGGTGACCGCCTTTCCGCC---CGGGGTAGATCTTGCGTCTGGATCCTGG 11461 ||| ||| | || || || ||||| ||| | | | | || || ||||| Sbjct 1210 AGAGTGATGTTGGCAACGGC---ACCGCCATTCGGCATGTAGCGAACTTCCGGGTCCTGC 1154 Query 11462 CCCAGATGGCCGACCAGGATTACCTTGTTCACTCC 11496 ||||||| ||||| | ||||| ||||| || || Sbjct 1153 CCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 1119 >seq410746 Length=249 Score = 82.4 bits (90), Expect = 3e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 11227 GCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCC 11286 |||||||||||| ||||| | ||| | | ||||| | ||||||||| || || Sbjct 238 GCCGTCCTGGCCGGTGTACTTGTCGTAGCGGATGGAACCTTCCACGTAGACCTGCGAACC 179 Query 11287 CTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCA 11346 ||| |||||||| | | ||||| ||| | ||| ||| |||| ||||||||||| Sbjct 178 CTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAAGGTCACCCGGTGCCA 119 Query 11347 CTCGGTGCGCTCCTG 11361 |||||||||||||| Sbjct 118 TTCGGTGCGCTCCTG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 207230637504436