Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq79071 141 1e-28 seq48110 127 2e-24 seq222524 105 7e-18 seq225304 102 9e-17 seq213894 93.3 5e-14 >seq79071 Length=852 Score = 141 bits (156), Expect = 1e-28 Identities = 146/190 (77%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 65588 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65647 |||||| || || || || || || |||||||| || || |||||||| || | || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 65648 ATTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGA-- 65705 ||||| || ||||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 65706 -TTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACC 65764 ||||| |||||||||||| || | || ||||| || ||||| |||||||| || Sbjct 301 TTTAAC---TGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCC 357 Query 65765 ACCTTCAACA 65774 |||||||||| Sbjct 358 ACCTTCAACA 367 >seq48110 Length=2021 Score = 127 bits (140), Expect = 2e-24 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 6973 ATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGG 7032 |||||| || ||||| || |||||| || ||| ||||| ||||| || || || Sbjct 734 ATCGCCCGGCTGCAGCAGTGCGGTGTAAACCGCAAAGTTAGCCTGAGAACCTGAGTGTGG 793 Query 7033 TTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT- 7091 || ||||| ||| ||| | || |||||||||||| || || ||||||||||| | || Sbjct 794 CTGCACGTTAGCGTAATCGGCACCAAACAGTTCTTTTGCGCGATCAATTGCCAGCTGCTC 853 Query 7092 --CGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGC 7149 |||| ||| || | |||| |||||||| || |||||||| ||||| || ||||| Sbjct 854 AACGATATCAACG---TACTCACAGCCGCCGTAGTAGCGTTTGCCCGGATAGCCTTCAGC 910 Query 7150 ATACTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACA 7189 || || ||||| | ||||||||| || | ||||||| Sbjct 911 GTATTTATTGGTGAGCTGAGAACCTTGTGCCTGCATAACA 950 >seq222524 Length=8439 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65588 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65647 ||||||| || || || || ||||| || ||||| || || || || || || || | Sbjct 4025 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 4084 Query 65648 ATTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATT 65707 ||||| || |||||||| |||||||| || ||||| ||||| |||||||| || || | Sbjct 4085 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 4144 Query 65708 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 65767 | || |||||||| || | ||| || || || ||||| ||||||||||| || Sbjct 4145 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 4204 Query 65768 TTCAAC 65773 || || Sbjct 4205 CTCCAC 4210 >seq225304 Length=784 Score = 102 bits (112), Expect = 9e-17 Identities = 205/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 6926 CCATGTGTTAAATGACCACC--GCAATCCAAAGACATCGCCAATACTGAATCGCCTGGAC 6983 ||||||||||||||||| || | ||| || ||| | |||| || ||| || ||| Sbjct 448 CCATGTGTTAAATGACCCCCATGAAAT--AATTTCATTCCTAATATTGTATCACCAGGAT 391 Query 6984 TCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTG 7043 | |||||||| |||||||| || || || || || ||||| |||||||| || | Sbjct 390 TTAGCAACGCGGTATAAACAGCAAAATTAGCTTGAGATCCTGAATGCGGTTGAACATTAG 331 Query 7044 CGAAATTGCAAC--TAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATC 7101 | ||| || | | || || | ||| || || | |||||| | || || | ||| Sbjct 330 CATAAT--CAGCGTTGAAAAGCTTTTTTGCTCGATTAATTGCTAATTTTTCTACAATATC 273 Query 7102 GGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 | | | ||||||| || || || ||||| | ||||| || || || || ||||| || Sbjct 272 TACGTATTCACAACCACCATAGTAACGTTTTTCAGGATAACCTTCTGCGTATTTGTTAGT 213 Query 7162 AAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCAA 7221 || |||||||| || | ||| |||| || ||||||||| |||||||| || Sbjct 212 TAATTGTGAACCTTGTGCATACATGACATAATTACTAGTATAGTTTTCTGATGCAATTAA 153 >seq213894 Length=28734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 65598 TGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGT 65657 || ||||| || || ||||| || ||| | || || || ||| | | || |||||| Sbjct 8979 TGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAGCGT 8920 Query 65658 ACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCA 65717 || |||||||| || || || ||||||| ||| ||||||||||| || | | || | Sbjct 8919 ACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCG-- 8862 Query 65718 TCTTCCAG-GGTATTT--CGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAA 65772 ||||||| | |||| |||| | || || |||||||| |||||||| ||||||| Sbjct 8861 -CTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAA 8805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549900528280680