Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq248802 399 5e-107 seq159964 100 7e-17 >seq248802 Length=12257 Score = 399 bits (442), Expect = 5e-107 Identities = 785/1148 (68%), Gaps = 26/1148 (2%) Strand=Plus/Minus Query 25256 GCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGC 25315 || ||| ||| |||||| |||||||| ||||| ||||| ||| || ||||| ||||| Sbjct 3213 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 3154 Query 25316 GTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTC--GGCCGTGTTCGGCT 25373 || |||||||| ||||| ||| |||||||| || | || ||| || || | Sbjct 3153 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 3094 Query 25374 CCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACC 25433 || ||| ||| | | |||| | ||| || ||| || | ||| || ||| Sbjct 3093 TCG--TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACT 3036 Query 25434 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 25493 | ||||||| | | | ||||||||| | |||| ||| ||||||| |||| | Sbjct 3035 TGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGG 2976 Query 25494 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 25553 | ||| ||||| ||||| || | ||| || |||||| || | ||| ||| |||| | Sbjct 2975 CCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGAAGTTTT 2916 Query 25554 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT--- 25610 | || |||||| ||| || || || ||||| | ||||||||| ||||| |||| Sbjct 2915 CAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCTT 2856 Query 25611 TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGT 25670 ||||| ||| |||| || || | || ||||| | ||||||||| || | Sbjct 2855 TGCGGATCA---GCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCT 2799 Query 25671 CCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCG 25730 ||||| ||||| | || |||| | ||||| ||||||||| ||| |||| |||| Sbjct 2798 GCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCG 2739 Query 25731 AAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCG 25790 | | || || ||||||||| ||||||| ||||| || ||||||| |||| |||| Sbjct 2738 ACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCG---- 2683 Query 25791 CCGGCGCCGGGAT-GACAG---CCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCC 25846 | |||| || || | ||| ||| || | | ||| | || |||| ||| |||| Sbjct 2682 CGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCG 2623 Query 25847 GGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCC 25906 |||||||||||||| | ||||| |||| ||| | | ||| ||| | || || | Sbjct 2622 GGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCG--C 2565 Query 25907 TT--CGTTTTGCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCG 25964 || |||||| |||||| | ||||| | |||| | | ||||||||| ||| | | | Sbjct 2564 TTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTG 2505 Query 25965 CCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCT 26024 |||| ||||||| ||||| | ||| ||| || || ||| | ||||||| ||||||| Sbjct 2504 CCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCT 2445 Query 26025 TCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCG 26084 | ||||| || | |||||| ||||||||||| || || || ||||| ||||| | Sbjct 2444 TAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAG 2385 Query 26085 GCGTCACGGT-GCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACG 26143 | || | | |||||||| || ||| || | | |||| | || || | ||| Sbjct 2384 -CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACG 2326 Query 26144 CGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAG 26202 ||||| || || || | |||||| |||| | | | ||||| | |||| | || ||| Sbjct 2325 CGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAG 2267 Query 26203 CGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCACGGGCGT 26262 |||||| | ||||| || || | |||||| |||| || | |||||| ||||| Sbjct 2266 CGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGT 2207 Query 26263 ATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGC 26322 |||||||| || || | || ||||| || || || |||||||| | ||||| | | Sbjct 2206 GTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGA 2147 Query 26323 CGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTG 26382 || || || | | ||| |||| || || |||||||| | ||||||||||||||| Sbjct 2146 GGTGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTG 2087 Query 26383 GTGGTAAT 26390 ||| |||| Sbjct 2086 GTGATAAT 2079 >seq159964 Length=5345 Score = 100 bits (110), Expect = 7e-17 Identities = 279/422 (66%), Gaps = 22/422 (5%) Strand=Plus/Minus Query 3205 GCGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCT 3264 |||||||||||| ||| || ||||||||||| || ||||| || ||| || ||| | Sbjct 1020 GCGCAACATCCTCAAAAGCCGCCAGATCGGTGCCACCTGGTATTTTGCGTTTGAAGCGTT 961 Query 3265 CGTCGACGCCCTCGACAC---CGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCA 3321 | | ||| | || ||||| || || || || || ||||| ||||| || Sbjct 960 TGAGAATGCCGTACTGACGGGCGACCCG---CAGATTTTTCTTTCTGCGAGTAAGGCGCA 904 Query 3322 GGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGGGGCAGCC----GACATCG 3377 |||| | || ||| |||||| | | ||||| | |||| | |||| Sbjct 903 GGCGGAGGTGTTCCGCTCGTACATTGTGAACATCGCG----GAGCAGTATTTTGGCATCA 848 Query 3378 AGCTCACGGGCGATCCGATTATCTTGCCGAGC---GGCGCGACGCTGTACTTCCTGGGCA 3434 ||| ||||| |||| |||| || |||| || ||| ||| ||||||| || Sbjct 847 CGCTGACGGGTAATCC---TATCCGGCTGAGCAACGGTGCGGAACTGCGCTTCCTGTCCA 791 Query 3435 CGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGG 3494 | ||| |||||||||||| ||| ||| | | |||| ||| ||||| || |||| Sbjct 790 CTAACAAAAACACCGCGCAGTCCTACAGCGGGCATCTGTACTGCGATGAATATTTCTGGG 731 Query 3495 TTCCGAA-GTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGG 3553 | ||||| || | || |||||| | || ||| || |||||| | |||| | ||| Sbjct 730 TGCCGAACTTTGCACG-CCTGAACGAAGTGGCCAGCGCCATGGCCACGCACGATAAATGG 672 Query 3554 CGCAAGACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGC 3613 |||| |||||||| |||||| || | || ||| |||| || ||||||||| | Sbjct 671 CGCACCACGTACTTTTCCACGCCATCGGCCAAAACCCACCAGGCCTATCCGTTCTGGACC 612 Query 3614 GG 3615 || Sbjct 611 GG 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119609894064802