Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq194023 210 5e-50 seq449472 156 1e-33 seq207983 131 4e-26 seq37562 120 8e-23 seq366053 80.6 7e-11 seq255299 80.6 7e-11 seq102074 80.6 7e-11 >seq194023 Length=5833 Score = 210 bits (232), Expect = 5e-50 Identities = 425/619 (69%), Gaps = 24/619 (4%) Strand=Plus/Minus Query 34209 CCGCACTGGAACAGCCCTGAAGCATGGGAGGATTTCTTGTGAACA---ACGTTTTTACCG 34265 |||||||||||||||||||||| |||||||||||| | ||| || | | | || Sbjct 607 CCGCACTGGAACAGCCCTGAAGGCTGGGAGGATTTCATATGAGCATGCAACTGGTAGACG 548 Query 34266 CGATACAAAACCGTGACGGAGAAGCCCTTTCTCGCATGTCAGGTTATGAGCATCAGTACA 34325 |||| | || |||||||| | ||| | | |||||| | || | || || Sbjct 547 CGATTAATAATCGTGACGGCGCTGCCATGGCCCGCATGGCTGGCGGTCGCTATGAG---- 492 Query 34326 CCAACAATGACAACGTGGTGAACATGTCAGCAGAGAGGCTTGTTGATGCCCTTTTCAAAC 34385 || || || || | | || ||| ||| ||| || || || |||||||| | Sbjct 491 CCG-----GAGAAAGTCATCAGCAGCGAAGCGGAGCAGCTGGTAGACGCGCTTTTCAAGC 437 Query 34386 AGCTGAAACAACTGTTTCCGGCGGCAGTGGTAACCAACCTGAAGACGCCAG--AGCAG-G 34442 || |||| ||| | || ||||| |||| |||| ||||||| | || ||||| | Sbjct 436 AGTTGAAGCAAATTTTCCCGGCATCAGTCAGCACCAGCCTGAAGG-GAGAGGAAGCAGAG 378 Query 34443 AAGTTGCTGCAAAACAGCAGTGGATTGCTGCGTTTGCCGAAGGGGGGATCCGAACCCGTG 34502 ||| | | || | ||||||||||| || || || || || ||| ||| || | Sbjct 377 AAGA--CCACGAAGCGCCAGTGGATTGCCGCTTTCGCTGAGAACGGAATCAAAACACGCG 320 Query 34503 AACAGGTTTCTGCTGGTATGCGCCACGCCCGCGCCAGTGAGTCTCCG--TTCTGGCCGTC 34560 | ||| |||| || || | ||||| ||||||||||| || ||| | ||||||||||| Sbjct 319 AGCAGCTTTCGGCAGGCGTTCGCCAGGCCCGCGCCAGC-AG-CTCAGATTTCTGGCCGTC 262 Query 34561 GCCAGGGCAATTCATCAAGTGGTGTAAAGACAGCAAGATGGTTCTTGGCGTCACCATTGA 34620 || || | |||||| ||||| ||||||||| | |||| ||||| |||||| || | Sbjct 261 ACCCGGTAAGTTCATCGCCTGGTGCAAAGACAGCTCGGTGGTGCTTGGGGTCACCCTTCA 202 Query 34621 CGATGTGATGGCGGAGTTTCACCGGTACAGCAAGGAAAAAAGTTTATATCCTGGTGGTCC 34680 || || ||||| ||||||||||| |||| | ||| || | | | | || || | Sbjct 201 GGACGTCATGGCAGAGTTTCACCGATACAACCGGGAGAAGGGCATGCACACGGGCGGCGC 142 Query 34681 CGAAAGATTCCCGTGG-CGGCATCCGGTTATGTACTGGGTCGTATGTGATACCCGCCGTG 34739 || | ||||| ||| |||| ||||| ||||||||||| || || || ||||| || | Sbjct 141 TGAGCGGTTCCCCTGGTCGGC-CCCGGTGATGTACTGGGTTGTCTGCGACACCCGGCGGG 83 Query 34740 CAATGTATCAGCGCCAGCTTAGCGAGATTGAGGTTGAGAAACACGCGCGCAGGCTGCTCG 34799 | ||||| ||||| ||| | |||||| |||||| ||||| ||| || | || | Sbjct 82 CGATGTACCAGCGTCAGATGAGCGAGGCTGAGGTGGAGAAGTTCGCCGCCAAGAAACTGG 23 Query 34800 ATGATTGGGCGAAAAAGGT 34818 |||| ||| |||| || || Sbjct 22 ATGAATGGTCGAAGAAAGT 4 >seq449472 Length=298 Score = 156 bits (172), Expect = 1e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 28778 CCCTTCATCGTCATCAGACGAAATCCCCAGGCTTCAACAACTTTTAGTGCTTCGAGTGGT 28837 |||||||| |||||||| || || |||||||| || | || || || ||||| | ||| Sbjct 297 CCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGGT 238 Query 28838 TGTGTTGGCACCCACCACATGGCCAACAGACAGTTTTCATCGGCCAAATCCCACGCAGGA 28897 || ||||||||||||||||| |||| ||| || || || |||| |||||||| | || Sbjct 237 TGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGGC 178 Query 28898 AGGCGGCAGATATCCAGCACACTCATAACCGGATATTTAAAACCGGCACCGCGATTACCA 28957 | ||||| |||||| |||| |||| | |||||| || || ||||| | || Sbjct 177 AAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCCG 118 Query 28958 TCTGCGGCTTTGTCCCGGTATACCCAGGGTGGATCTGCATAGATTAGTGTGTATTT 29013 || |||||| || ||||| ||| |||||||||||||| || || |||||||| Sbjct 117 TCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT 62 >seq207983 Length=7775 Score = 131 bits (144), Expect = 4e-26 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 2339 GCATTCTGCCGGGCAATCTTCCGACCAATTTCCGCATCAAAGTTTTCCGGGCTTGCACAG 2398 || ||||| || || ||||| ||||| || || ||||| ||||| || ||||| || ||| Sbjct 7609 GCGTTCTGGCGCGCGATCTTGCGACCGATCTCGGCATCGAAGTTCTCGGGGCTGGCGCAG 7550 Query 2399 GCGCTCTCTCCGGTGACGGTGAAGCCGTTGCGCAGCACCAGAACGCAGAACGTCAGCAGA 2458 || ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 7549 GCCGACTCGCCGGTGACGGTGAAGCCGTTGCGCAGGACCAGAACGCAGAAGGTCAGCAGA 7490 >seq37562 Length=17931 Score = 120 bits (132), Expect = 8e-23 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38766 ATGGCTAAATCAGCAGCAGAGCGCAAAGCCGCTCAGAGAGCCAGACAAGCTGCATCTGGT 38825 |||||||| ||||||||||| ||||||||||| ||| | || | || ||||| ||| Sbjct 3121 ATGGCTAAGTCAGCAGCAGAACGCAAAGCCGCGCAGCGCGCACGGCAGGCTGCCAGCGGT 3062 Query 38826 GTGCGTAAGCTGGAAATTGTGCTTGATGCTCAGGAAATTGAAATGCTGGAGCGTAACTGT 38885 | || || ||||| | ||| | |||||||||||| | |||||||||||||||||| | Sbjct 3061 GAGCAGAAACTGGAGCTGGTGTTAGATGCTCAGGAACTCGAAATGCTGGAGCGTAACCGG 3002 Query 38886 GCTACGCGTCGCCCCGGGCGTGCGCCTTACGAATTTGGTGAGTATATAGCGTTACTGATC 38945 | | || || || || | | ||||||| | | |||||||| || | || || Sbjct 3001 GTCGCCCGCCGTCCAGGCAGAGACTCTTACGAGCTGGCCGAGTATATCGCCCTTCTCATT 2942 Query 38946 CGCCAGGATGATGC 38959 || ||||||||||| Sbjct 2941 CGTCAGGATGATGC 2928 >seq366053 Length=223 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2865 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 2923 ||||||||||||||| |||| || ||||||||||| | |||||| |||||||||||||| Sbjct 211 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTGAGCTAA 153 >seq255299 Length=12406 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2865 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 2923 ||||||||||||||| |||| || ||||||||||| | |||||| |||||||||||||| Sbjct 3306 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTGAGCTAA 3364 >seq102074 Length=1593 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2865 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 2923 ||||||||||||||| |||| || ||||||||||| |||||||| |||| ||||||||| Sbjct 1128 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAA 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124270102431732