Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_008193.1 Length=30505 Score E Sequences producing significant alignments: (Bits) Value seq275553 80.6 5e-11 seq270004 80.6 5e-11 >seq275553 Length=1540 Score = 80.6 bits (88), Expect = 5e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 18275 ACAAGGTTGAGGCGTTCGGGTGCAAGATGTTGCTCACTGATTTGCTAAATATCGATACAA 18334 ||||||| ||||||||||| |||||| || |||| | | | || || ||||| | | Sbjct 671 ACAAGGTGGAGGCGTTCGGCTGCAAGCTGGTGCTGAGCAACGTTCTGGATCTCGATCCCA 730 Query 18335 AGGGCGGATCAAAATCAACGaaaaaaaTCAAGTATTTTGTGACAAGTCCGGATTTCGTGC 18394 ||||||| | | | || | ||||| || || || ||||| |||| | ||||| Sbjct 731 AGGGCGGCGCTATCACTACCCACAAAATTAAATACTTCGTGACCGATCCGAAGTTCGTCA 790 Query 18395 GCATTAACGGCGTGCCGTATCT 18416 ||| ||||||||||||||||| Sbjct 791 ACATCAACGGCGTGCCGTATCT 812 >seq270004 Length=5502 Score = 80.6 bits (88), Expect = 5e-11 Identities = 119/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 1256 TTCTAAATGCGATGGCGCGAAATGTGCATACTTCATTGTCATTTCAATTGTTGAGTGTCC 1315 ||| ||||| ||| || ||||| | ||| ||||||||||| || | || || Sbjct 2121 TTCCAAATGATCTGGAGCAAAATGAGAATAACGCATTGTCATTTTGATATCGGTATGACC 2062 Query 1316 GAGAATCTCTTT-TAATACTAAAATGTTTCCCCCGTTCATCATAAAATGACTGGCGAAAG 1374 || || ||||| || ||| | |||||||| || ||||||||||| ||||| || |||| Sbjct 2061 AAGTAT-TCTTTGTAGTACAAGTATGTTTCCACCATTCATCATAAAGTGACTTGCAAAAG 2003 Query 1375 TATGGCGTAAAACGTGCGTAAGCTGTCCTTTCGGCAAATCAATACC 1420 | ||||| ||||| |||| | ||| || | || | ||| || || Sbjct 2002 TGTGGCGCAAAACATGCGATAACTGACCGTCAGGAAGATCTATTCC 1957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96916428884134