Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq121512 383 3e-101 seq416309 159 6e-34 >seq121512 Length=219671 Score = 383 bits (424), Expect = 3e-101 Identities = 529/730 (72%), Gaps = 20/730 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 213301 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 213242 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| | |||||||||||||||||| ||||| |||||| Sbjct 213241 TCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 213182 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAG 42599 | ||||| ||| ||||| || ||||||| | || ||||||| || ||||||| Sbjct 213181 ATCCACTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAG 213125 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || | || ||| ||||| || || || ||| | | ||||| |||||| Sbjct 213124 AAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGG 213065 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 |||||| ||||||||| | || ||| |||| ||| | | || ||||| | Sbjct 213064 GCGCTCCGCTGGATCGACGGCGGGGAGCGC----TTCGCGGAGCGCATCGTCGCCTTCGC 213009 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 | ||||||||||||||||||||||||| ||||| | ||||||||||||||||| || Sbjct 213008 CTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCG 212949 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 | | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 212948 CGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCA 212889 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAG 42896 | ||||| ||||||||||| | ||| | |||| | |||| || || || Sbjct 212888 CTGCGACTTCGCCTGCCTCCTCT--ACGA-CATCCTCCGCGGCAAG--CTGGACGAGTCC 212834 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || ||| | ||| | | ||||||||||| ||||||| ||||||| || | || Sbjct 212833 CGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCG 212774 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || ||| | || |||||||||||| |||||||||| || |||||||| ||| |||| Sbjct 212773 CTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTC 212714 Query 43017 GCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTT 43075 ||||||| || || || | | |||| || || |||||| | | ||| || Sbjct 212713 GCCGACCGCCTGCTCATGGC-GCTGGGCTGCAAGAAGCTGTACAACGCCACCAACCCGTT 212655 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| |||||| ||||||| || |||||||||||||||| |||||||||||||||| Sbjct 212654 CGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGG 212595 Query 43136 CGACTACCAG 43145 ||| |||||| Sbjct 212594 CGAGTACCAG 212585 >seq416309 Length=254 Score = 159 bits (176), Expect = 6e-34 Identities = 185/247 (75%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 |||| | ||||||||| ||||| ||| |||||| ||||||||||| | | | ||| Sbjct 254 GTCCAGAGCATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACGCTCTG 195 Query 42960 CCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 || ||| ||||| ||||||||||| | ||||||||||| ||||||| ||| |||||| Sbjct 194 CCT-TGTGCCCTGCTCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTCGTCGC 136 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 ||||| ||| || | | || || ||||||| | | ||||||||| Sbjct 135 CGACCGTCTGCTCCTCGCACTCGGCAACAAGAAGTTCTACAATGCCACCAACCCCTTCGA 76 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 ||| |||||||||||||| | | |||||||||||||| ||||||||||| |||| ||| Sbjct 75 CTTCATGGAGAACATCTCCCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGA 16 Query 43139 CTACCAG 43145 |||||| Sbjct 15 GTACCAG 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 938446275502960