Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq248802 381 1e-101 >seq248802 Length=12257 Score = 381 bits (422), Expect = 1e-101 Identities = 781/1148 (68%), Gaps = 26/1148 (2%) Strand=Plus/Minus Query 23346 GCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGC 23405 || ||| ||| |||||| |||||||| ||||| ||||| ||| || ||||| ||||| Sbjct 3213 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 3154 Query 23406 GTGTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAATGTC--GGCCGTGTTCGGCT 23463 || ||||| || ||||| ||| |||||||| || | || ||| || || | Sbjct 3153 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 3094 Query 23464 CCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACC 23523 || ||| ||| | | |||| | ||| || ||| || | ||| || ||| Sbjct 3093 TCG--TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACT 3036 Query 23524 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 23583 | ||||||| | | | ||||||||| | |||| ||| ||||||| |||| | Sbjct 3035 TGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGG 2976 Query 23584 CGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 23643 | ||| ||||| ||||| || | |||||| |||||| || | ||| ||| |||| | Sbjct 2975 CCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGAAGTTTT 2916 Query 23644 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT--- 23700 | || |||||| ||| || || || ||||| | ||||||||| ||||| |||| Sbjct 2915 CAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCTT 2856 Query 23701 TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGT 23760 ||||| ||| |||| || || | || ||||| | ||||||||| || | Sbjct 2855 TGCGGATCA---GCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCT 2799 Query 23761 CCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCG 23820 ||||| ||||| | || |||| | ||||| ||||||||| ||| |||| |||| Sbjct 2798 GCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCG 2739 Query 23821 AAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCG 23880 | | || || ||||||||| ||||||| ||||| || ||||||| |||| |||| Sbjct 2738 ACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCG---- 2683 Query 23881 CCGGCGCCGGGAT-GACGG---CCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCC 23936 | |||| || || | | | ||| || | | ||| | || |||| ||| |||| Sbjct 2682 CGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCG 2623 Query 23937 GGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCCTGCGGTACGCGGCGGCTTCTTCC 23996 |||||||||||||| | ||||| |||| ||| | ||| ||| | || || | Sbjct 2622 GGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCG--C 2565 Query 23997 TT--CGTCTTGCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCG 24054 || ||| || |||||| | ||||| | |||| | | ||||||||| ||| | | | Sbjct 2564 TTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTG 2505 Query 24055 CCGCGAGCGCGGCCGCGACCGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCGCGGCT 24114 |||| ||||||| || || | ||| ||| || || ||| || ||||||| ||||||| Sbjct 2504 CCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCT 2445 Query 24115 TCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCG 24174 | ||||| || | |||||| ||||||||||| || || || ||||| ||||| | Sbjct 2444 TAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAG 2385 Query 24175 GCGTCACGGT-GCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACG 24233 | || | | |||||||| || ||| || | | |||| | || || | ||| Sbjct 2384 -CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACG 2326 Query 24234 CGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAG 24292 ||||| || || || | |||||| |||| | | | ||||| | |||| | || ||| Sbjct 2325 CGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAG 2267 Query 24293 CGTGCCTTTCTTGCCGGCCTTGCCGAGCGCGGCGACGACGTTCGTCAGCAGCACGGGCGT 24352 |||||| | ||||| || || | ||| || |||| || | |||||| ||||| Sbjct 2266 CGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGT 2207 Query 24353 ATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGC 24412 |||||||| || || | || ||||| || || || |||||||| | ||||| | | Sbjct 2206 GTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGA 2147 Query 24413 CGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTG 24472 || || || | | ||| |||| || || |||||||| | ||||||||||||||| Sbjct 2146 GGTGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTG 2087 Query 24473 GTGGTAAT 24480 ||| |||| Sbjct 2086 GTGATAAT 2079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113572299880206