Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq248802 399 5e-107 >seq248802 Length=12257 Score = 399 bits (442), Expect = 5e-107 Identities = 785/1148 (68%), Gaps = 26/1148 (2%) Strand=Plus/Minus Query 24350 GCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGC 24409 || ||| ||| |||||| |||||||| ||||| ||||| ||| || ||||| ||||| Sbjct 3213 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 3154 Query 24410 GTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAATGTC--GGCCGTGTTCGGCT 24467 || |||||||| ||||| ||| |||||||| || | || ||| || || | Sbjct 3153 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 3094 Query 24468 CCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACC 24527 || ||| ||| | | |||| | ||| || ||| || | ||| || ||| Sbjct 3093 TCG--TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACT 3036 Query 24528 AGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGCGGGCCGTCGACGA 24587 | ||||||| | | | ||||||||| | |||| ||| ||||||| |||| | Sbjct 3035 TGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGG 2976 Query 24588 CGGGCATCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCT 24647 | ||| ||||| ||||| || | ||| || |||||| || | ||| ||| |||| | Sbjct 2975 CCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGAAGTTTT 2916 Query 24648 CGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT--- 24704 | || |||||| ||| || || || ||||| | ||||||||| ||||| |||| Sbjct 2915 CAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCTT 2856 Query 24705 TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGT 24764 ||||| ||| |||| || || | || ||||| | ||||||||| || | Sbjct 2855 TGCGGATCA---GCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCT 2799 Query 24765 CCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCG 24824 ||||| ||||| | || |||| | ||||| ||||||||| ||| |||| |||| Sbjct 2798 GCTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCG 2739 Query 24825 AAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCG 24884 | | || || ||||||||| ||||||| ||||| || ||||||| |||| |||| Sbjct 2738 ACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCG---- 2683 Query 24885 CCGGCGCCGGGAT-GACAG---CCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCC 24940 | |||| || || | ||| ||| || | | ||| | || |||| ||| |||| Sbjct 2682 CGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCG 2623 Query 24941 GGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCC 25000 |||||||||||||| | ||||| |||| ||| | | ||| ||| | || || | Sbjct 2622 GGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCG--C 2565 Query 25001 TT--CGTTTTGCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCG 25058 || |||||| |||||| | ||||| | |||| | | ||||||||| ||| | | | Sbjct 2564 TTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTG 2505 Query 25059 CCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCT 25118 |||| ||||||| ||||| | ||| ||| || || ||| | ||||||| ||||||| Sbjct 2504 CCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCT 2445 Query 25119 TCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCGTCCG 25178 | ||||| || | |||||| ||||||||||| || || || ||||| ||||| | Sbjct 2444 TAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAG 2385 Query 25179 GCGTCACGGT-GCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTGCCTTCGGCGACG 25237 | || | | |||||||| || ||| || | | |||| | || || | ||| Sbjct 2384 -CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACG 2326 Query 25238 CGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAG 25296 ||||| || || || | |||||| |||| | | | ||||| | |||| | || ||| Sbjct 2325 CGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAG 2267 Query 25297 CGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGCAGCACGGGCGT 25356 |||||| | ||||| || || | |||||| |||| || | |||||| ||||| Sbjct 2266 CGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGT 2207 Query 25357 ATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACGCCGAGCACGGC 25416 |||||||| || || | || ||||| || || || |||||||| | ||||| | | Sbjct 2206 GTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGA 2147 Query 25417 CGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTG 25476 || || || | | ||| |||| || || |||||||| | ||||||||||||||| Sbjct 2146 GGTGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTG 2087 Query 25477 GTGGTAAT 25484 ||| |||| Sbjct 2086 GTGATAAT 2079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116591096972504