Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq248802 500 2e-137 seq129892 244 3e-60 seq159964 100 7e-17 seq199410 84.2 5e-12 >seq248802 Length=12257 Score = 500 bits (554), Expect = 2e-137 Identities = 743/1041 (71%), Gaps = 22/1041 (2%) Strand=Plus/Plus Query 18994 TTCCCGCTCGACACCCCCGTCCTGCTGACCAACCCGCAGGCCTACATCGGCAAGGCCGGC 19053 ||||||||| |||| || || ||| | ||| || |||||| | || || ||||| Sbjct 2195 TTCCCGCTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGT 2254 Query 19054 GACAAAGGCACGCTCGCCCACACGCTCGACGCCATCACCGACCAGACCAACCCGCTCACG 19113 | || |||||||| || | |||| | || || ||||||||| ||| ||| | ||| Sbjct 2255 GTCAGCGGCACGCTGGCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACG 2314 Query 19114 GTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGCCGAGACCACGTCCAACCTGATCGGC 19173 || ||||||||||| | | |||| ||| || | ||||| ||| | |||||| Sbjct 2315 GTGGTGGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAATATCATCGGC 2374 Query 19174 ACCACCAACGCGGCCGGCCGGTACACCGGCATGAAGGCGCTGCTGACCGCCCGCA-ACCG 19232 || | | || |||||| |||||||| ||||| |||||||| | || ||| |||| Sbjct 2375 GGCAGCGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGC--GCAGACCG 2432 Query 19233 TT-TTGGCGTCGCGCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGA 19291 ||||||| |||||| || || | ||||||||||| || ||| ||| | | Sbjct 2433 ACCTTGGCGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCA 2492 Query 19292 CCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGGCT 19351 ||| ||||| | ||| ||| ||||||||||||||| ||| | ||||| ||||||| Sbjct 2493 CCGCGCTGGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTACGGCT 2552 Query 19352 GCCAAACCAAGGAAGAG--GCCGTCGCCTACCGCAGCAACTTCGGCCAGCGCGAAGCGAT 19409 | |||| | ||| | || || || ||| |||||| |||||||||| ||| Sbjct 2553 GTAAAACG--GTAAGCGATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCGCGAGCTGAT 2610 Query 19410 GGTGATGTGGCCGGATTTCGTCGGCTGGGATACCGCCGCCAATGCCGAGACCAC--CCTG 19467 |||||| ||||| || || |||| |||| | |||| ||| || | | || ||| Sbjct 2611 GGTGATCTGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGAAACTGCCTA 2670 Query 19468 TGGGCCACGGCCCGCGCGGTCGGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCAC 19527 || |||| |||||||| ||||| |||||||||| ||||| ||||||| ||||||||| Sbjct 2671 TG--CCACCGCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAGCGGCTGGCAT 2728 Query 19528 AAGACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTCGCGCGACG-TGTTCTG 19586 || || || || ||||| | || |||||||||||| | || ||| || | ||||| Sbjct 2729 AAAACCCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTC-CGCCTCGGTATTCTG 2787 Query 19587 GGACCTTCAGGACCCGGCGACCGACGCGG----GCTACCTGAACGCCAACGAGGTGACCA 19642 |||||| ||| | || |||||| || | ||| |||| |||| || | |||| Sbjct 2788 GGACCTGCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGAA-GCCAGCG---TCACCA 2843 Query 19643 CGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGTGCGGATCCGC 19702 ||||| | | | ||||| | ||||||||||||| ||||| || || | || |||| Sbjct 2844 CGCTGATCCGCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGC 2903 Query 19703 TGTTCGCCTTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAG 19762 |||||||||| || |||| ||||||| | ||||||||| | |||||||||||||| || | Sbjct 2904 TGTTCGCCTTTGAAAACTTCACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATG 2963 Query 19763 CACACATGTGGGCGAACGACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCTGGAGG 19822 | || |||||||| |||||| ||| ||||||| || || |||||||| | | | | Sbjct 2964 CGCATATGTGGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCG 3023 Query 19823 GCATCAATGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGCGCCGCGT 19882 | ||||| |||||||| || ||||| | | ||| || |||||||||| | | | Sbjct 3024 GGATCAACGCCAAGTTCCGTGAGCTGATCAACGCCGGTTATCTGCTGGGCGCCAACTGCT 3083 Query 19883 GGTTCGACGCGGACGCCAACAGCAAGGACACGCTGAAGGCCGGGCAACTCGCCATCGACT 19942 ||| ||||| |||||||||| |||| | ||||| ||||| | || ||||||| Sbjct 3084 GGTACGACGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACT 3143 Query 19943 ACGACTACACGCCCGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCATCACCGACC 20002 ||||||| || || || || || ||||| | || || | || |||||||| |||||| Sbjct 3144 ACGACTATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACA 3203 Query 20003 GCTACCTGATGCAGTTCGCCG 20023 |||||||| | | ||||||| Sbjct 3204 GCTACCTGGCGAACTTCGCCG 3224 >seq129892 Length=23088 Score = 244 bits (270), Expect = 3e-60 Identities = 815/1245 (65%), Gaps = 51/1245 (4%) Strand=Plus/Minus Query 14505 CTGGAATCCGAGCCGATCACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGG 14564 |||| || ||||||||| |||||| || |||||||||||||||||||| || | | Sbjct 1272 CTGGCGTCGGAGCCGATCGTCAAGCTGCTGGAGGAGAACGCCTACCGCGAGGTGATCCTG 1213 Query 14565 CGCCAGCGCGTGAACGACGCGGCGCGTGGGGTCATGCTGGCCTTCGCCGAAGGGGAAG-- 14622 ||||||||| | ||||| |||||| | |||| |||| |||||| || || || Sbjct 1212 CGCCAGCGCATTAACGAAGCGGCGAAAGCCACCATGGTGGCATTCGCC--AGCGGCAGCG 1155 Query 14623 ACCTGGAGCAGATTGCGGCGAACTTCAACGTGCAGCGTCTGACCATCACGCCGGCTGACA 14682 | || || ||| ||| || ||| | ||| |||||| | | || || || | Sbjct 1154 ATCTCGACCAGCTTGGGGTCAACAACGGCGTCACCCGTCTGGTGCTGAAACCCGCAGATA 1095 Query 14683 CCACCACCGTGCCGCCGACGCCCGCCGTGATGGAGGGCGACGACTCGCTGCGCGAGCGC- 14741 || ||| |||||||||| || || | | ||| |||||||| | || |||| Sbjct 1094 ACAGCACGCTGCCGCCGACCCCGGCGCGGCTTGAGAGCGACGACGACTTCCGTCTGCGCA 1035 Query 14742 --GCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGGCCCGACCAAGGCCTACGAGCAGT 14799 || |||| | ||||| |||||| ||| || || ||| | |||||| || | Sbjct 1034 TCGCCCAGG---CCTTTGAGGGGCTGAGCGTAGCGGGGCCGGGCGGGGCCTATGAATATC 978 Query 14800 TCGCGCGCTCGGCTGACGGCCGGGTGGCGGACGCGCGCGCGATCAGCCCGGCCGGCGCGG 14859 ||| ||| || || || || |||||||| | ||| ||||||||| | || | Sbjct 977 ACGCCCGCAGCGCCGATGGTCGCGTGGCGGATGTCACCGCCATCAGCCCGTCTCCGGCCG 918 Query 14860 AGGTGGTGGTCTCGGTGCTGTCGCACCTGAACGACG--GCGCGGCCGACGAGAGCCTGCT 14917 ||| ||| | |||||||||| |||| | || ||| |||| || ||||| Sbjct 917 TGGTCACCGTCACCGTGCTGTCGCG--TGAAGGGCGCGGCGAGGCCAGCGCTGAACTGCT 860 Query 14918 GGCGGCTGTACGCACCGCGTTGAGCGATGACGATACCCGGCCGCTCGGCGACCGCCTGAC 14977 ||| | || | | ||| ||| || || || || ||| | | || ||| | | Sbjct 859 GGCCGTCGTCAACGCGGCGCTGAATGACGAGGAGGTGCGCCCGGTGGCGGATCGCGTCAG 800 Query 14978 GGTGCAATCCGCCACCATCGTCCCATACCGCATCCGTGCCACGCTGTACCTGGCATCGGG 15037 ||||| || || | |||||| |||||| | |||||||||| || | || Sbjct 799 CGTGCAGTCGGCAAAAATCGTCGAGTACCGCGTTGAGGCCACGCTGTTTCTCTATCCCGG 740 Query 15038 GCCGGCGGCCGAGCCGATCCTGGACGC---GGCTGGCAAGCGGGCCGACGTCT--ACCGC 15092 ||||| ||| |||||||||| | ||| ||| | | || ||| | | | ||||| Sbjct 739 GCCGGAGGCGGAGCCGATCCGCGCCGCCTCGGCAGCCCGGCTGGCGGCCTTTGTAACCGC 680 Query 15093 ACCACGCGGCGGCGCATCGGTCGCGACATCAACCGCTCGGCGATCACGGCGGCGCTGCAT 15152 ||| || |||| | || ||||| ||| | | || ||| | ||||||||||| Sbjct 679 -CCAGTCG-CGGC---TGGGGCGCGATATCCGCAGGTCAGCGCTGTATGCGGCGCTGCAC 625 Query 15153 GTGGAGGGCGTGGAAAAGCTGGTGCTGCACGAACCGGCCGAAGACATCGCGCTCGATCTG 15212 || ||||| || | | | |||| | || || | || | | ||| ||| Sbjct 624 GTCGAGGGTGTCCAGCGCGTAGAGCTGGCGCAGCCTGCTGCTGATGTGGTGCTGGATAAA 565 Query 15213 ACGCAGGCGGGCTACTGCACCGGCGTGGATATCGTCAACGGGGGCACCAGTGAGT-AGCG 15271 || ||||||| |||||||||| | | |||| || || || ||||| | || Sbjct 564 ACCCAGGCGGCGTACTGCACCGCTACGCAGATCGCGGTAGGAGGTTCCGATGAGTGACCG 505 Query 15272 CAACCCTGTTGCC-GCCGAACGCGACGCCGCTGGAGCGTCGC-GCCGCGCAGACGGGCGC 15329 | ||| |||| | || | || | | ||| ||| || || ||||| | | | || Sbjct 504 C----CTGCTGCCCGTCGG-CTCGTCACAGCTCGAG-GTGGCCGCCGCCGAAGCCTGTGC 451 Query 15330 ACGCATCGAACGCGTGCCGGTGCCGCTGCGCGACCTGTGGAACCCAGCCACCTGTCCG-- 15387 ||| | | | ||||||||||||||||| |||||||||||| || || ||| Sbjct 450 GCGCCTGCAGCAGCTGCCGGTGCCGCTGCGCACCCTGTGGAACCCGCAGACTTGCCCGCT 391 Query 15388 GCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGGAACCCGGCCTGG 15447 |||| ||| | |||| || |||||| | | || ||||| |||||| | | || ||| Sbjct 390 GCCG--CTGCTCCCCTATCTCGCCTGGGCCTGGTCGGTGGATCGCTGGGATCAGGAGTGG 333 Query 15448 CCGCTCGCCACCAAGCGCGCCGTGACGGCCGCCTCCTACTTCGTGCACCGCAAGAAGGGC 15507 ||| | ||| ||| || ||| |||||||| | || | |||||| |||||| Sbjct 332 CCGGAAGAGACCCGGCGTGCGGTGGTCGCCGCCTCGCAGTTTATCCACCGCCGCAAGGGC 273 Query 15508 ACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGGGCTTCCTGATTCGCGTCATCGAG 15567 || ||| ||| | ||||| | ||||||||||||||| | || || || | | ||| Sbjct 272 ACCATCTCGGCGATCCGCCGGGTGGTGGAGCCGCTGGGGTATCTCATCCGTATTACCGAA 213 Query 15568 TGGTGGCAGACCAACCCGCCCGGGCCGCGC--GGGTCGTTCGGGCTCGATGTGGGCGTGC 15625 |||||||||| |||| ||||| | || | ||| |||| || || || || | Sbjct 212 TGGTGGCAGAACAAC--------GCCGCACCTGGAACTTTCAGGCTGGACGTCGGTGTAC 161 Query 15626 TGCAAACCGGCATCGACGAGGCCATGTACGCCGAGCTGGAACGCCTCATTGACGACGCCA 15685 || |||| ||||| |||| |||||| |||||||||||| | |||| |||||| | Sbjct 160 TGGAAACTGGCATTACTGAGGAGATGTACAACGAGCTGGAACGATTGATTGGCGACGCGA 101 Query 15686 AGCCGTGTTCCCGGCCGATGCT--CGGCCTGCAAATCAGCCTGGA 15728 | || || | ||| || | ||||||| ||||| |||||| Sbjct 100 AACC-CGTCAGCCGCC-ATCTTACCGGCCTGACAATCAACCTGGA 58 Score = 84.2 bits (92), Expect = 5e-12 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 14068 CAGTCGGTGCGCGACATCCTCTCCACGCCGATCGGCTCGCGCGTGATGCGCCGCGACTAC 14127 |||||||||||||||||||| || ||| |||||||| ||||||||||| |||||| Sbjct 1705 CAGTCGGTGCGCGACATCCTGCTGACCCCGCAGGGCTCGCGGGTGATGCGCCGTGACTAC 1646 Query 14128 GGCAGCCAGGTCCCCGACTTGATCGATCAGCCGTTGAACCCGGCAACCCGCCTGCGCACC 14187 ||| | | | | | || |||| |||||| |||| | | ||||||| | Sbjct 1645 GGCTCGCTGCTGTCGGCGCTGCTCGACCAGCCGCAGAACGAGACGCTGCGCCTGCAGATT 1586 Query 14188 ATGTCCGCC-GC--CGTGTCTGCCCTGGTGCGCTGGGAGCCGCGTATC 14232 ||||| ||| || | || || ||| |||||||||||||||| ||| Sbjct 1585 ATGTCGGCCTGCTACATG---GCGCTGCTGCGCTGGGAGCCGCGCATC 1541 >seq159964 Length=5345 Score = 100 bits (110), Expect = 7e-17 Identities = 273/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 4879 CCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGA 4938 |||| ||||||||||||||||| || | | || |||||||| ||||| || Sbjct 610 CCGGTCCAGAACGGATAGGCCTGGTGGGTTTTGGCCGATGGCGTGGAAAAGTACGTGGTG 669 Query 4939 CGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAA-GCGCGG 4997 ||||| | | ||| | |||||| || ||| || | | ||| | || || | ||| Sbjct 670 CGCCATTTATCGTGCGTGGCCATGGCGCTGGCCACTTCGTTCAGG-CGTGCAAAGTTCGG 728 Query 4998 CACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTT 5057 ||||||||| ||||||||| ||||||| | ||| || |||||||||||| ||| Sbjct 729 CACCCAGAAATATTCATCGCAGTACAGATGCCCGCTGTAGGACTGCGCGGTGTTTTTGTT 788 Query 5058 CGTGCCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCTC 5117 ||| || ||| || || |||||| |||| || |||| ||| ||||| Sbjct 789 AGTGGACAGGAAGCGCAGTTCCGCACCGTTGCTCAGCCGGATAGGATTACCCGTCAGCGT 848 Query 5118 GATCCCGGCCGCGTCCTTGGCGAACTGGATGATGTATTGCTTGAAGACGTGCGCCTGCGC 5177 ||| || | || |||| | | ||||| ||| || | ||||||||| Sbjct 849 GATGCCAAAATACTGCTCCGCGATGTTCACAATGTACGAGCGGAACACCTCCGCCTGCGC 908 Query 5178 CTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGAT---GAACGC 5234 ||| || || || || |||||||| || || ||||| || | | ||||| Sbjct 909 CTTACTCGCAGAAAGAAAAATCTG---CGGGTCGCCCGTCAGTACGGCATTCTCAAACGC 965 Query 5235 CTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCG 5288 || || || ||||| || || |||||||| ||||| ||||| | |||||| Sbjct 966 TTCAAACGCAAAATACCAGGTGGCACCGATCTGGCGGCTTTTGAGGATGTTGCG 1019 >seq199410 Length=3174 Score = 84.2 bits (92), Expect = 5e-12 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 3058 CGCCTTCTCCACGTCGCCGAATCCGCCGGTGTTGTTCGGAATGATGCCCATGAGCTGCGG 3117 ||| ||||| || || || || ||||||| ||||||||| || || ||||| | |||||| Sbjct 1630 CGCTTTCTCAACATCCCCAAAGCCGCCGGCGTTGTTCGGCATAATCCCCATCATCTGCGG 1571 Query 3118 CGGTACGCGGTGCGCGGCGAGCTGGTCGTCGCGCGTGACGTTCTTGATGTT 3168 |||||| || |||||| | ||| |||||| || | || || || || || Sbjct 1570 CGGTACCCGATGCGCGCCTAGCATGTCGTCACGGCTCACATTTTTAATATT 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123175828248644