Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq292125 228 2e-55 seq201909 183 9e-42 seq37562 168 2e-37 seq194023 145 2e-30 >seq292125 Length=1950 Score = 228 bits (252), Expect = 2e-55 Identities = 256/341 (75%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 46369 AGCTGGAGAAAAAACACGAATCTGTGGTTTTTACTGAGCGCGGTGTACACGGTGGAACAT 46428 |||| |||||||| ||||||||||||||||| |||||||| || || | || || || | Sbjct 1400 AGCTTGAGAAAAACCACGAATCTGTGGTTTTCACTGAGCGGGGAGTCAAAGGGGGTACTT 1341 Query 46429 ATGGCGGGAAGTTTGTTGCTTATGATTATGCAGCATGGCTAAACCCCGGATTTAAATATG 46488 |||| || |||||||| || ||||| ||||| |||||||||||||| ||||||||||||| Sbjct 1340 ATGGTGGTAAGTTTGTGGCATATGACTATGCGGCATGGCTAAACCCTGGATTTAAATATG 1281 Query 46489 CAGCCTATAAAGTCCTGGATGACTACTTCACCGGAGGACTTCAGCATCGCAACAGCT--- 46545 |||| || ||||| || ||||| || ||||| || |||| || |||| |||| Sbjct 1280 CAGCGTACAAAGTTCTTGATGATTATTTCACAGGTCAACTT---CAACGCAGAAGCTCTC 1224 Query 46546 TAAGTGCGCAGCTCAATATGAAGTGTCATGAGTTTGATCAGAAAAAAGATATGGCGAGCT 46605 | || || ||| | ||||| || ||| |||||||| ||||| |||||||||||||| | Sbjct 1223 TCAGCGCTCAGTTGAATATTAAATGTATGGAGTTTGACCAGAAGAAAGATATGGCGAGTT 1164 Query 46606 TCTGTGGACAAGGGCTGGCGGCATGGCGCTATACGAAGCCAGTGTTGGTCGCTGAGATTA 46665 | || || || ||| |||| | ||| || || | || |||| |||||||| | Sbjct 1163 TTTGCGGGCAGGGGTTGGCTGGCTGGAAACATGAAAAAGCTGTTCTGGTTGCTGAGATAA 1104 Query 46666 ACTCCCTGGCTAACCAGCTGCAGATAACGATCCCCGGGCTG 46706 | || ||| | | ||| | |||||| | || || | |||| Sbjct 1103 ATTCTCTGACAAGTCAGTTACAGATATCCATACCTGAGCTG 1063 >seq201909 Length=21394 Score = 183 bits (202), Expect = 9e-42 Identities = 264/370 (71%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 45538 GATATCGTTGGCGTATGGACTGTATGTCACGGACACACCGGAAAAGACATCATGCTAGGT 45597 ||| |||| |||||||||||||| || |||| ||||| || |||||||| | | Sbjct 4627 GATGTCGTCGGCGTATGGACTGTTTGCTACGGTCACACTGGGGCCGACATCATCAAAAGC 4568 Query 45598 AAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCC 45657 ||||| || |||||||| || ||| | || || |||||||||||||| ||||| || Sbjct 4567 AAAACCTACACCGAAGCTGAGTGCCAGGCGCTGCTGAATAAAGACCTGCGAACGGTGGCT 4508 Query 45658 AGACAAATTAACCCGTACATCAAA-GTCGATATACCGGAAACAACGCGCGGCGCTCTTTA 45716 | || ||| |||| | |||||| ||| || || || || ||||| | ||||| Sbjct 4507 AATCAGATTGACCCTTTAATCAAACGTCCG-ATCCCCGACACGACGCGAGCAGCTCTCAT 4449 Query 45717 CTCGTTCGTCTACAACGTGGGTGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAAT 45776 ||| || |||||||| || ||||| ||| | || || || || ||||| Sbjct 4448 CTCATTTTCATACAACGTCGGCGCTGGAGCATTCCGCCAGTCAACCCTGCTGAAGAAAAT 4389 Query 45777 AAACCAGGGCGATATCAAAGGCGCATGTGACCAGCTACGTCGCTGGACATACGCTGGCGG 45836 ||| || || | ||| ||||| || | ||||| || ||||| ||||| ||||| Sbjct 4388 CAACGCAGGTGACACTGTAGGTGCATGCAACGAACTACGCCGATGGACCTACGCAGGCGG 4329 Query 45837 TAAGCAATGGAAAGGCCTGATGACTCGTCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGG 45896 ||||| |||||||| ||||||| || || ||||| ||||||||||| ||| ||||||| Sbjct 4328 CAAGCAGTGGAAAGGTCTGATGAACCGGCGCGAGATAGAGCGTGAAGTTTGTCTGTGGGG 4269 Query 45897 GCAACAATGA 45906 || ||||| Sbjct 4268 TCAGAAATGA 4259 >seq37562 Length=17931 Score = 168 bits (186), Expect = 2e-37 Identities = 290/416 (70%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 41316 AGGTGCTGGCGCTGAAAGTGGATCCGGAGTCGCCGGAGTCTTTTATGTTACGCCCAAAAC 41375 ||||||||| | || | ||||| || |||||||| | ||| ||||||| ||||| | Sbjct 14633 AGGTGCTGGAGATGGCTATCGATCCTGAAACGCCGGAGACGTTTCTGTTACGGCCAAAGC 14692 Query 41376 GTCGCCGCTGGGTTAATGAAAAGTACACGCGCTGGGTTAAGACACAGCCGTGTGCATGTT 41435 | ||||| ||| || || ||||| || | |||| ||| |||||||| || | Sbjct 14693 GCCGCCGATGGAGCAACGAGAAGTATACCCAGTGGGCCAAGCAGCAGCCGTGCTTGTGCT 14752 Query 41436 GTGGAAAGCCCGCTGATGATCCCCACCACCTGATAGGCCACGGTCAGTGTGGAATGGGTA 41495 |||| || || || || || ||||||||||| || |||| ||| | || ||||| | Sbjct 14753 GTGGGAAAAAAGCAGACGACCCGCACCACCTGATCGGATACGGCCAGGGCGGTATGGGAA 14812 Query 41496 CAAAAGCGCATGACCTTTTTGTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCATG 41555 | ||||||||||| || || |||||||| | |||||| ||| ||||| || || |||| Sbjct 14813 CTAAAGCGCATGATCTATTCGTGTTGCCGCTATGCAGAGCGCACCACGATGAACTTCATG 14872 Query 41556 CGGAT-ACCGTGGCATTTGAAGAGAGGTATGGCTCCCAGCTGGAGCTGATATTTCGTTTT 41614 | ||| ||| || ||||| | | ||| ||| | |||| |||| |||| |||| Sbjct 14873 CTGATGTGCGT-GCGTTTGAGGCTAAGTACGGCACACAGCCGGAGTTGATCATTCGCACG 14931 Query 41615 ATCGATCGTGCGCTGGCAATTGGCGTGCTGGCC---------TGATTTTGTGGAGAAAGT 41665 ||||| | || ||||| ||||||| | ||| | | | ||||| | Sbjct 14932 ATCGACAGAGCCTTGGCACTTGGCGTTATTGCCACGGGTAAGAAAAATAGCGGAGACA-A 14990 Query 41666 TGATGCGTGATATTCAAATGGTTCTGGATCGTTGGGG-AGCATGGGCGGCGAGTGA 41720 |||||||||||||| ||||| | || || ||||| ||| ||||| |||| ||| Sbjct 14991 AAATGCGTGATATTCAGATGGTGTTAGAACGATGGGGCAGC-TGGGCAGCGAATGA 15045 Score = 96.9 bits (106), Expect = 1e-15 Identities = 235/351 (67%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 40042 CCGGTGAGTGTGATTCATGGGGGAAATGAACGGGGAACGTATGTCTGCAAGGAACTGGTG 40101 || || || || ||||| || || || | || || || ||||| ||||| || ||||| Sbjct 13338 CCAGTTAGAGTAATTCACGGTGGTGATAACCGTGGCACCTATGTATGCAAAGAGCTGGTT 13397 Query 40102 TATGCCTATGCAATGTGGATCAGCCCGTCATTCCATCTGAAGGTGATCCGTACTTTCGAT 40161 || | |||||||||||||||||| |||||||| |||||||| ||| | || || ||| Sbjct 13398 TACTCTTATGCAATGTGGATCAGCTCGTCATTCAGCCTGAAGGTTATCAGGACCTTTGAT 13457 Query 40162 ATGGTA--ACCAGCGCACCGGAAAAATTATCCGGGCAGGCT---GCTGACAAGATGCAGG 40216 ||| ||| ||| | | | | | || | | | || || || |||||| Sbjct 13458 TCAGTAGTGACAGGGCAAC--ATACCTCACAGGGACCGAATCGGGCAGATCAGGTGCAGG 13515 Query 40217 CTGGTGTGATTCTGCTGGACTTTATGCGCAGGGA-GTTAAACCTGTCTAACTCTTCAGTG 40275 | || || ||||| || || | | | || | | | || ||||| ||||| ||| | Sbjct 13516 CGGGCGTAATTCTACTTGAGTCT-GCCTCACGTACCCTGAATCTGTCGAACTCATCAAAG 13574 Query 40276 CTTGGGGCCTGTCAGAAACTCCAGGAGGCTGTTGGCTTACCGAATCTGGCACCGCGCTAT 40335 || || || | |||||||| ||||| | |||| | || || || || ||| Sbjct 13575 CTGGGTGCTTACCAGAAACTTCAGGATTTCGCTGGCCTGCCAAACATGATGCCTTCATAT 13634 Query 40336 GCCATTGATGCTCCTGCTGATGCACACGATGGCTCAAGTCGCCCGACACTG 40386 |||||||| || || ||||| | ||||| ||||| ||||| ||| || Sbjct 13635 GCCATTGACGCGCCCTCTGATTCCATTGATGGTTCAAGCCGCCCCACAATG 13685 Score = 91.5 bits (100), Expect = 4e-14 Identities = 222/331 (67%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 32109 CCATCATCAAGCCCGAGATCGCGGCGTTCAGTTGCCAGCATGATGAGATCGGC-ATATTT 32167 |||||||| || || | ||| ||||| ||||| ||||||| | || || || || ||| Sbjct 4491 CCATCATCCAGACCCAAATCACGGCGCTCAGTACCCAGCATCACCAGGTCTGCCATCTTT 4550 Query 32168 CACAGGCGTGCTCATAACCGGGGGTAACCCGTATTTCTCACGGATTACGGCGTCTATTTT 32227 || | | ||| | || || | ||| | || | ||| || || ||||| | Sbjct 4551 -ACTGCAGGTGACATTGCTGGTGGAAGTCCGAACTTATTACGAATCACTGCGTCAACACG 4609 Query 32228 TTCTTCCATCCGTTTATAGTCAGGAAGAAGGCGTTTCAGTGGAGCGGGGATGTC-CTGAC 32286 | | || || | ||||||||| || ||| ||||||||| | |||||| ||| | Sbjct 4610 TCCCTCAATGGCCTGATAGTCAGGTAGCAGGGCTTTCAGTGGTGAATTGATGTCGCTG-C 4668 Query 32287 AATACGCTTCTGTTGCATCATGCATTAACGCTTCAAAAGCAAATTCCTGCGGTACCAGCT 32346 |||| ||||| | ||||| |||| | ||||||| ||| ||| ||||| ||||| | Sbjct 4669 AATAAGCTTCAGCGGCATCGTGCAGAAGGGCTTCAAGAGCGTGTTCATGCGGCACCAGAT 4728 Query 32347 GGCTGCAAAGCACCGCATGTTGGGCGACGCTGTAGAAGTGTGAAAGATGTCCTGCAAAGC 32406 |||| | || | || ||||| ||||||||||| | | ||| || | || | Sbjct 4729 AGCTGACGTGAACAGAGTGCTGGGCTACGCTGTAGAATTCGCTCACATGGCCAGTGAACC 4788 Query 32407 GACAGATATTTGAAAGGGAAACCGCGATATC 32437 | || ||||| || || | | |||||||| Sbjct 4789 GGCAAATATTCGACAGAGCGGCAGCGATATC 4819 >seq194023 Length=5833 Score = 145 bits (160), Expect = 2e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 37482 CATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAA 37541 |||||| ||| | | |||| |||||| |||| ||| || || || ||||| |||| Sbjct 1271 CATGAGCATGAATTTAATGGCTAAAGCCATGAGCATTAAGGTTGGCAACCCATTAAGAAA 1212 Query 37542 ACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTA 37601 || || ||||| ||||| ||||| || |||| |||| | || || |||||||| ||| Sbjct 1211 GCTTGTGCTGATAAAGCTTGCTGACAACGCCAACGATAAAGGCGAATGCTGGCCTTCCTA 1152 Query 37602 CCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGC 37661 |||||| ||||| |||||||||||||| ||||| || || |||||| |||||||| | Sbjct 1151 CCAGCACATTGCCGACCAGTGCGAGATAAGCAAGCGGTCAGTGATGCGTCATATTGATGA 1092 Query 37662 CCTTTGTGAG 37671 |||||| ||| Sbjct 1091 CCTTTGCGAG 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149454313790766