Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq159964 165 2e-36 seq275553 158 3e-34 seq155840 93.3 9e-15 seq49421 86.0 1e-12 >seq159964 Length=5345 Score = 165 bits (182), Expect = 2e-36 Identities = 365/544 (67%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 13771 ATGGCGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGATGCGGCCGCCG 13830 || ||||| || | ||| |||||||| |||||||| | || || || | || |||||| Sbjct 481 ATCGCGTCTTCAAGGGTAATGACGTAACGCCACTGGCCATCTGGACACAGCCGCCCGCCG 540 Query 13831 TCGCGTAGGTC----ATCTTCACCAGGGAAGTCGATGGCCACCCGGCTCG-GCCGCTGTC 13885 || || || || | ||| |||||| | | ||| | || | || || | Sbjct 541 TCACGCAGTTCGCTGAATTTC----GGGAAGGTGGTCGCCGCACGCTTTTTGCTGCCGAG 596 Query 13886 CCTTCCAGCGATCCCCGGTCCAGAACCGGTACGCCTCGTGCACCTTGCTCGACGGGGTCG 13945 | ||||| ||||||||||||||| | || |||| ||| ||| ||| || || | Sbjct 597 C-TTCCACTCTTCCCCGGTCCAGAACGGATAGGCCTGGTGGGTTTTGGCCGATGGCGTGG 655 Query 13946 AGAAGTAGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCT 14005 | ||||| || ||||||| | || || |||||||| |||||||| || ||| Sbjct 656 AAAAGTACGTGGTGCGCCATTTATCGTGCGTGGCCATGGCGCTGGCCACTTCGTTCAGGC 715 Query 14006 TCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGG 14065 | ||||| || | |||||| ||||| ||| ||| | | ||| | |||||| | Sbjct 716 GTGCAAAGTTCGGCACCCAGAAATATTCATCGCAGTACAGATGCCCGCTGTAGGACTGCG 775 Query 14066 CACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTTCGACAGCACGATGGGGT 14125 | |||| ||| ||||| |||| |||| || || ||||| |||| ||| || | Sbjct 776 CGGTGTTTTTGTTAGTGGACAGGAAGCGCAGTTCCGCACCGTTGCTCAGCCGGATAGGAT 835 Query 14126 TGCCGGTCAGGGTGACGCCGAGGAAGGTCTGGGCGATCTTGCAGATATAGGAGCGGAACA 14185 | || ||||| |||| ||| | | || ||||| || || || |||||||||| Sbjct 836 TACCCGTCAGCGTGATGCCAAAATACTGCTCCGCGATGTTCACAATGTACGAGCGGAACA 895 Query 14186 CCTCCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTTGCCACCCGTCAGAATGGCAT 14245 |||||||||| || | || || || |||||||| | | |||||||| | ||||| Sbjct 896 CCTCCGCCTGCGCCTTACTCGCAGAAAGAAAAATCTGCGGGTCGCCCGTCAGTACGGCAT 955 Query 14246 CCTCCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGATCTGACGGGACTTGAGAATGT 14305 ||| ||||| || || ||||| | || |||||||| ||| ||||| |||| Sbjct 956 TCTCAAACGCTTCAAACGCAAAATACCAGGTGGCACCGATCTGGCGGCTTTTGAGGATGT 1015 Query 14306 TACG 14309 | || Sbjct 1016 TGCG 1019 Score = 127 bits (140), Expect = 4e-25 Identities = 196/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 16502 CTGGACGAGATGGCCTCCGACCTCATCAACACCACCATTGACCCACTGTTCCAGCAA-GA 16560 ||||| | ||||||||| ||||| |||| || || || | | || || ||| || Sbjct 3151 CTGGATGCGATGGCCTCTGACCTTATCAGCAGCAAAATCCCGGCGCAGTACC-GCACTGA 3209 Query 16561 CCCCCGTCTGGTGGTGCTGGTCGGCACCGATCTGGTCGCAGCCGCTCAGGCCAAGCTCTA 16620 ||| ||||||||||||||||| || | || ||||| || || | ||| | || || Sbjct 3210 CCCGCGTCTGGTGGTGCTGGTTGGTGCTGACCTGGTGGCCGCTGAGCAGTACCGCCTGTA 3269 Query 16621 CAGCGAAGCCACCAAGCCGAGCGAGCAGATCGCCGCTCAGCAGTTGGCCAAGTCCATCGC 16680 | |||| | |||| |||| |||||||||| ||| | ||| || | ||||| Sbjct 3270 CCAGAAAGCTGACCGCCCGACCGAGAAGATCGCCGCGCAGATGCTGGACAGCACAATCGC 3329 Query 16681 CGGTCGCAAGGCCTATATCCCGCCCTTCTTCCCGGGCAAGCGGATGGTGGTCACCACCCT 16740 || |||||||| | | ||||| ||| | ||||||||||| |||||||| || | || Sbjct 3330 GGGCCGCAAGGCGATTGTGCCGCCGTTCATGCCGGGCAAGCGCATGGTGGTGACGCCGCT 3389 Query 16741 GGACAACCTGCACTGCTACACCCAGCGCGGCACCCGC 16777 |||||||| ||| || ||||||||||||||| Sbjct 3390 CAGTAACCTGCATATCTATACGCAGCGCGGCACCCGC 3426 >seq275553 Length=1540 Score = 158 bits (174), Expect = 3e-34 Identities = 532/820 (65%), Gaps = 17/820 (2%) Strand=Plus/Plus Query 20255 TACTGGGCCGATGGCCGCACCCTGGACGCCGAGGGCGGCGACTACCAGGTGATCGAGAAC 20314 |||||||| || || |||||||||||||| || || || ||||| |||| ||| ||| || Sbjct 2 TACTGGGCGGACGGGCGCACCCTGGACGCGGAAGGGGGGGACTATCAGGCGATTGAGTAC 61 Query 20315 CTGCGCATTGCCTACAAGGTGGCGCGCCGGATGCGCCTGCGCGCCATCGCCCGCATCGGG 20374 |||||||| || |||| |||||||| || | | |||| || || |||||||| | Sbjct 62 CTGCGCATCGCTGACAAAGTGGCGCGGCGCGTCAGGCTGCTGGCGATTGCCCGCATTGCT 121 Query 20375 GATCGCTCGTTCAACTCCACCCCGGGCAGCACCGCCGNNGC-CATCACCTACTTCGGCAA 20433 || || ||| | |||||||| ||| || | |||| || || | ||| | | || Sbjct 122 GACCGTTCGCTTAACTCCACGCCGTCGAGTATGGCCGCCGCACAGC-TTTACATGGCGAA 180 Query 20434 GGATCTGCGCGAGATGGCCAAGTCCACCACCATCAACGGCCAGCCGTTCCCGGGCGACAT 20493 |||||||| ||| | | | ||| | || |||||| || |||||| || || | Sbjct 181 ACCGCTGCGCGAAATGTCAACGGCCAGCCTGATTAACGGCGCGCGGTTCCCCGGTGAGGT 240 Query 20494 CGCCTCCCCCCAGGATGGCGACATCCGCATCCAGTGG--GTCGCCAAGAACCTGGTCTCG 20551 || || | || || ||| | |||| |||| ||| || | || |||| Sbjct 241 GAAATCGCCGCGTGACGGTGACGTGAGCATTGTGTGGACGTCACCGACAA--AGGTCAGC 298 Query 20552 GTGTTTGTGGTGGTGCGCACCGTGGACTGCCCCAAGGGGATCACCGTCAACATCATGCTC 20611 | | | ||||| | ||| | || || || || ||| ||||||||| | | | ||||| Sbjct 299 ATCTATCTGGTGATCCGCCCGGTTGAATGTCCGAAGCAGATCACCGTAAGCCTGATGCTG 358 Query 20612 GATTTGAGCCTCAACAATGGGGAGGGCTAACCCATGACCCGTCGTATCTCCGGTGCCAGC 20671 ||| || || | | | || |||| | |||||| | ||| | || ||| ||| Sbjct 359 GATACCAGTCTTGATACTACGG-GGGCGCAGGCATGACACAGCGTTTATCGGGT--CAGT 415 Query 20672 TTTGACACCACCCTCTTG--GGGGCCATGGTCCACGTCGAAAAGGCCAGCCTCTCCATCA 20729 || | | | | | || | |||| ||| | || || | ||||| ||||| Sbjct 416 CTTTTGATGTGCATATGGACGGTGAGCTGGTTCACTTTGAGAAAGTGAGCCTGGACATCA 475 Query 20730 CCGACAACAGCGCCGTGGCGCAAACCCGGGGGATCCCGGACGGCTTCGTCGATGGCGATG 20789 | ||||||| ||||| | ||| || | ||| | |||||||| | || | || || | Sbjct 476 CTGACAACACCGCCGCCGTGCAGACGCAGGGCGTGCCGGACGGTTATGTGGCCGGGGACG 535 Query 20790 TCGCCGCCGAGCTGGAGTTCGAGCTCGACACCAAGAATTTCTCGCAGTTGGCAGATGCCG 20849 | | || ||| ||| | ||| | || ||| | | |||| || | | || Sbjct 536 TGGGGGCAGAGGGGGAAGTGGAGGTGAGCAGCAAAACGCTACAGCAGCTGACTGCCATCG 595 Query 20850 CCAAACGCGCGGGGAGCTGGCGCGGAATGGAGCCGGACGATGTGCTGTTCTACGCCGACA 20909 || || |||||| |||||||| || |||| ||| | |||||||| || | Sbjct 596 CCCGCCGTGCGGGGTCGTGGCGCGGCATTTCCCCGGTTGATTTTCTGTTCTATGCAAAGG 655 Query 20910 CCGGCACCGAGACCATGAAGGTGGAGGCCTTCGGGGTGAAGCTGCTGGTCTCCGACCTGC 20969 |||| | || | ||||||||||| ||||| |||||| || | | || | | Sbjct 656 CCGGTTCAGAAGAAAACAAGGTGGAGGCGTTCGGCTGCAAGCTGGTGCTGAGCAACGTTC 715 Query 20970 TCGACATCGACCCCAAGGGCGGC---AGCAAGACCGTGCACAAGGTGAAAGGCTTTGTGA 21026 | || |||| |||||||||||| | || ||| ||||| | ||| ||| |||| Sbjct 716 TGGATCTCGATCCCAAGGGCGGCGCTATCACTACC---CACAAAATTAAATACTTCGTGA 772 Query 21027 CCTCCCCCGACTTCGTTCACCTCAACGGCGTGCCTTACCT 21066 || || | ||||| || ||||||||||||| || || Sbjct 773 CCGATCCGAAGTTCGTCAACATCAACGGCGTGCCGTATCT 812 >seq155840 Length=13837 Score = 93.3 bits (102), Expect = 9e-15 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 678 CGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCGGT 737 |||||| | || || || || |||||||||||||| | ||| ||||| || || || | Sbjct 11029 CGCATCACCTAGATGATCTGGTGCGAAGTGGGCATATCTCATAGTCATTTTTATATCACT 10970 Query 738 GTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTGGC 797 ||||| || || || || || || |||||||| || |||||||| ||||| || || Sbjct 10969 ATGGCCTAGTATTTTTTGGAGGACTAGAATGTTGCCTCCATTCATCATAAAGTGGCTTGC 10910 Query 798 GAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGG 836 || || || || || ||||| || || |||||||| Sbjct 10909 AAATGTGTGCCGGAGTACGTGAGTAAGTTGCCCTGCGGG 10871 >seq49421 Length=1006 Score = 86.0 bits (94), Expect = 1e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 676 ACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCG 735 || ||||||||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||| Sbjct 84 ACTGCATCTTCCAGATGGTCAGGAGCGAAGTGCGCATACCGCATAGTCATTTTGATGTCG 25 Query 736 GTGTGGCCGAGGATGCGCTG 755 | |||||||| | ||||| Sbjct 24 CTATGGCCGAGCACACGCTG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107986411899094