Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq261736 224 4e-54 seq226684 116 2e-21 seq220018 98.7 4e-16 >seq261736 Length=27266 Score = 224 bits (248), Expect = 4e-54 Identities = 448/650 (69%), Gaps = 18/650 (3%) Strand=Plus/Minus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || || ||||| | ||| |||||||| ||||||||||| | ||| || | |||||||| Sbjct 8130 TCTTCAAACATGATGTACGGATAGCCGGACTCAAACTGGATCTCGGCCAGCGTCTGGAAA 8071 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGA-TCCTATCATCTTTTAGCCACGTGTCGTA 60028 | | || | || |||||||| |||| | | || || ||| | || || Sbjct 8070 AATTCACGCGGGTTAATAAAGGTGCG-GCGAATGCGCTCGTCGGCCAGCATCTCTTCATA 8012 Query 60029 CATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGG 60088 | | ||| | | | || |||| | | | ||||| | | | |||||| || Sbjct 8011 CTTTTCGCTGATGCTGATATCGGCAAACGGCAGGCCGTAAATACGCTCAACGTCATACGG 7952 Query 60089 AGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGAT 60148 ||||| || ||||| |||| | | || || || || |||| || ||||| || | | Sbjct 7951 TGAGAACAGCGCCATGGGCTGGTTATCTTTCGCCAGCTGGAAGGTCACATCCGGGATCAC 7892 Query 60149 AACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATC 60208 || || || || || || ||||| ||||| ||||| ||||| ||||| ||||||||||| Sbjct 7891 CACGCCGAGCGACAGCGTTTTAATGCGGATTTTCTCATCGGCATTTTCGCGCTTGGTATC 7832 Query 60209 CAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCC 60267 ||||| |||| |||| || |||||||| || |||| ||||||||| || || ||||| | Sbjct 7831 GAGGAAGCGCA-GGATATCAGGGTGGTGCGCATTCAGATATACCGCGCCAGCACCCTGAC 7773 Query 60268 TTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGA 60327 ||| || || ||||| | ||| ||||| ||| || || ||||||||||| ||||| | Sbjct 7772 GTGCGCCGAGCTGGTTGGCGTAAGAGAACGCATCCTCCAGCATCTTCATCACCGGGATCA 7713 Query 60328 CTCCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGA 60385 | || || | ||| ||||||| | ||| ||||| || || | ||||| ||||| || Sbjct 7712 CGCCGGACGACTG--GTTCTCGATGCGCTTGATCGGCGCGCCGGATTCGCGCAGGTTAGA 7655 Query 60386 GA-ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG---AGAGTCCTGAACGA 60441 || || ||| || ||||| || ||||| || ||||| || |||| | || Sbjct 7654 GAGCAGGAACGCC-ACGCCGCCGCCGCGCTTGGAGAGCTGCAGGGCTGAGTTC---ACCG 7599 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || || || ||| |||| |||| | || || | |||||| || || ||| | Sbjct 7598 CGCGGCCAATCGACTCCATATTGTCTTCAATGCGCAGCAGGAAGCAGGAGACCAGCTCAC 7539 Query 60502 CTGCGTCGAGAAGCCCCGC-GTTGAGGAAGGTCGGAGTTGCAGGCTGGAA 60550 | ||| | |||| |||||||||||| || |||||||||||||| Sbjct 7538 C-GCGCTGCTGCTTGCCGCAGTTGAGGAAGGTGGGCGTTGCAGGCTGGAA 7490 >seq226684 Length=3079 Score = 116 bits (128), Expect = 2e-21 Identities = 216/314 (69%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 58488 GCGTAGATCTGCGCTCGGTTAATGTCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTG 58547 ||||| ||||||||| ||| ||||| || |||| | ||| ||||||||||||| Sbjct 678 GCGTAAATCTGCGCTTTGTTGATGTCACGGGTTGAGACGTCATCGCGGAAGAACAGCGTC 619 Query 58548 AGAGACATGCCCTGGTCTACCCAAGGAGATGCTACAGCGTACATATCAATGATCGGGTTA 58607 || |||| |||||| || || ||| ||| | ||||| ||||||| |||| | Sbjct 618 AGCGACAGGCCCTGATCGACATGCTGAGTCGCTTCTGCGTAGGTATCAATAATCGCTTCC 559 Query 58608 GGTCCGATAGCGTAAGCGCTATCA--ATTGAT-TCTACATTCTCATTGGTCACTCCGTAC 58664 || || || || || ||| || || | | |||||||||||||| | Sbjct 558 GGCCCAATCTGATACGC---ATCCTGATAGAGATGGAGATTCTCATTGGTCATAAACGGC 502 Query 58665 TGAGGGTAATAGACTCGACCAAGCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACA 58724 || || ||||| || || || ||||| ||||| | ||| | ||| ||| | Sbjct 501 GCGGGATAGTAGACGCGGCCGGTTTTGCCCTCTTTGCGGATCTCGATAGGGGAGACAATC 442 Query 58725 GGGTGAATCGAGGCCGTGGCATGGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCC 58784 || || || || ||||||||||| ||||| ||||| || |||||||| ||||||||| Sbjct 441 GGATGGATGCTGGAGGTGGCATGGTTGATGTAGGAGATTGAACCGGTTGGCGGGATCGCC 382 Query 58785 TGGAGGTTCTGGTT 58798 || |||||||| || Sbjct 381 TGCAGGTTCTGATT 368 >seq220018 Length=750 Score = 98.7 bits (108), Expect = 4e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 60198 CGCTTGGTATCCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCC 60256 ||||||||||| ||||| || || || ||||| ||||| || || | | ||||| || Sbjct 1 CGCTTGGTATCAAGGAAGCGGAA-AATATCGGGATGGTGCGCATTGAGCCACACCGCGCC 59 Query 60257 TGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCAT 60316 |||||||| | || || || || || | || |||||| || || || || ||||| Sbjct 60 AGCGCCCTGACGCGCGCCGAGCTGATTCGCATAAGAGAAGGCGTCCTCCAGCATTTTCAT 119 Query 60317 CACAGGGATGACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCCTGCCTCGCG 60376 ||| ||||| || || || | |||| ||| || || || || || || | ||| || Sbjct 120 CACCGGGATAACGCCCGACGACTGATTTTCAATACGTTTGATTGGCGCACCGGACTCACG 179 Query 60377 GAGGTTGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG 60427 ||||| || | || | |||| ||||| || ||||| || ||||| || Sbjct 180 CAGGTTTGACAGCAAAAAGGCGACGCCGCCGCCGCGCTTTGAAAGCTGCAG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 224354613075740