Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq260686 158 1e-33 seq65234 156 4e-33 seq1462 154 2e-32 seq209331 143 3e-29 seq222524 125 7e-24 seq79071 122 9e-23 >seq260686 Length=13603 Score = 158 bits (174), Expect = 1e-33 Identities = 316/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 135748 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135807 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 135808 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135867 || ||||||||||| | ||| || | |||||| |||| || || |||||||| | | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 135868 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135927 || | ||| ||||| | || | ||||||||||||||| | || ||||| || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 135928 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135987 || | ||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 135988 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 136045 ||| || || ||| ||||||| | |||| || ||| || || | Sbjct 5398 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 5341 Query 136046 CAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 136105 | ||||| || |||||||| ||||||| || ||||| | || || | | || Sbjct 5340 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 5281 Query 136106 CGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCGT 136164 |||| ||| | ||| | ||| | | ||||||| || || || || || ||||| Sbjct 5280 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 5222 Query 136165 GTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGAT 136208 || ||||| ||||| || | |||||| || || ||||| || || Sbjct 5221 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 5178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 134881 CCTTCTTTCGATCCTTTAA--CCGATACAATCCCGCGAGGCGGTTCAATACCGTTTGTGC 134938 || |||||||| |||||| | |||| | ||||| || |||||||||||||| ||| Sbjct 6514 CCGTCTTTCGACGCTTTAATGCTGATATGA--CCGCGCGGTGGTTCAATACCGTTGGTGG 6457 Query 134939 TGTTAGATACCTGAGAAGACGACTCACAAGGCATCAGAGCCGAAAGCGTACTATTACGAA 134998 ||| || | ||| ||||| | |||| | |||||||| || || |||||| || || | Sbjct 6456 CGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTAGAGTTGCGCA 6397 Query 134999 TGCCATATTTTTTCAGGTCTTCGCGCAGTTCTTCCCAATCCA 135040 ||| | |||||| ||| ||||| ||||||| |||| Sbjct 6396 GGCCGTGGGTTTTCACCGATTCACGCAGCGCTTCCCAGTCCA 6355 >seq65234 Length=1614 Score = 156 bits (172), Expect = 4e-33 Identities = 299/438 (68%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 135799 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTG 135858 |||||||| ||||| | || |||||||| || | | || ||||| | || |||| Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 135859 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCC 135918 || ||||| || | | | |||||| |||| |||||| ||||||||| | | ||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 135919 GCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAG 135978 ||||| || | || || ||||| || || || || || || | || || ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 135979 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 136038 || || ||| || |||||| |||| |||| | ||| | |||| || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 136039 ATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTT 136098 || |||||||| || || || || || || | || ||| || | |||||| | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 136099 GCTGTTTCGTTGAT-GCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAAA 136157 | ||| | || || | | ||| | || ||| |||||| | |||||| |||||||| Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAA 1014 Query 136158 TTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTTGCTTATT 136217 ||| || ||||| || | || |||| ||||||||| || || ||||| |||| | | Sbjct 1015 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 1074 Query 136218 CGCAACAGCATTATAAAA 136235 | || ||||||||||| Sbjct 1075 GGAAATTGCATTATAAAA 1092 >seq1462 Length=4781 Score = 154 bits (170), Expect = 2e-32 Identities = 290/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 135792 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCC 135851 ||| || || || || ||||||||||| || || || || | |||||| |||| || || Sbjct 1446 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 1387 Query 135852 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGA 135910 || || || | || ||| || ||||||| || || |||||||| |||||| | | Sbjct 1386 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 1328 Query 135911 GAGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAAT 135970 | ||||| || || || || | |||||||| ||||| || || ||||| ||||| || | Sbjct 1327 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 1268 Query 135971 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 136029 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 1267 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 1209 Query 136030 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATG 136089 ||| ||||| |||||| ||||||||||| || || || | || || || | | Sbjct 1208 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 1149 Query 136090 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 136149 || ||| | | || ||||||| | || || ||| || || | ||| || Sbjct 1148 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 1089 Query 136150 GAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATT 136209 || || |||||||| || || || || || || ||||| || || ||||| | || ||| Sbjct 1088 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 1029 Query 136210 T 136210 | Sbjct 1028 T 1028 >seq209331 Length=9407 Score = 143 bits (158), Expect = 3e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53316 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 53375 ||||| || |||| || ||||| || | || || || ||||||| ||| |||||| Sbjct 301 AATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGT 360 Query 53376 CTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 53435 || ||||| ||||||||||| ||||||||||| || |||||||| || ||||| ||| Sbjct 361 GAGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGA 420 Query 53436 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCA 53495 ||||| | |||||||||| |||||| || || |||||||| || | |||||||| Sbjct 421 TGTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCG 480 Query 53496 CCTTCGA 53502 ||||||| Sbjct 481 CCTTCGA 487 >seq222524 Length=8439 Score = 125 bits (138), Expect = 7e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||| ||||||||||||| || |||||||||||||| ||||| |||| | || || || Sbjct 4034 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 4093 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 ||| || ||||| ||||||||||| || |||||||| || ||||| || || | || || Sbjct 4094 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 4153 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 || || | |||| || || ||||| || |||| ||||||||| || || || Sbjct 4154 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 4210 >seq79071 Length=852 Score = 122 bits (134), Expect = 9e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53318 TTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACT 53377 ||| ||| ||| ||||||||||| | || ||||| |||||||| || || ||||| Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 53378 ATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATG 53437 || || ||||| || || || ||||| || || || |||||||| || || |||||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 53438 TTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACC 53497 || ||| || || || | |||| || || ||||| || |||| |||||| ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 53498 TTCGACA 53504 ||| ||| Sbjct 361 TTCAACA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522256517406800