Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq121512 167 5e-36 seq195257 125 2e-23 seq416309 111 3e-19 seq59864 107 4e-18 seq61564 84.2 5e-11 >seq121512 Length=219671 Score = 167 bits (184), Expect = 5e-36 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||||||| | ||||| || || || | || || || ||| Sbjct 213034 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 212975 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 212974 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 212915 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || | ||| Sbjct 212914 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTC 212855 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || || ||| | ||| | | || || || || | | Sbjct 212854 CGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATC 212798 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || ||| ||| | ||||||||| || ||| Sbjct 212797 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTC 212738 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 212737 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAAGAAG 212678 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| ||| ||||| || | || ||||||||||| ||||| || || || || Sbjct 212677 CTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 212618 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 212617 AACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 212586 >seq195257 Length=6037 Score = 125 bits (138), Expect = 2e-23 Identities = 370/560 (66%), Gaps = 24/560 (4%) Strand=Plus/Plus Query 68262 CCGGACGAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGACAGTTTTAATCAAGCC 68321 || || || || ||||||||||||||||| || ||| | | || ||| || | | Sbjct 307 CCTGAAGAGATTTACAATTTGGCCGCACAGTCTCATGTGAAAGTGAGCTTTGATACACCA 366 Query 68322 GAGGTGACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATA 68381 || || ||||||| |||| | ||||| | ||| | | || || |||||| || Sbjct 367 GAATATACGGCAAACGCCGATGGCGTAGGTGTACTACGTATTATGGAAGCTGTTCGTCTA 426 Query 68382 TCGGGT---GTC---AACTCTCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAA 68435 | || ||| || | || | |||||| ||| | || || ||||||| | Sbjct 427 TTAGGATTAGTCGAAAAAACAAAGATATACCAAGCCTCTACCTCCGAACTGTATGGTTTA 486 Query 68436 GTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTT 68495 ||||||| | || || | |||| || || |||||||| |||| ||||| | ||| Sbjct 487 GTGCAAGCGGTACCACAATCAGAAACGACACCTTTTTATCCAAGAAGTCCTTATGCTGTC 546 Query 68496 GCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATG 68553 ||||| |||| ||||||||||| | || || |||| | || | || |||| || Sbjct 547 GCAAAAATGTATGCTTATTGGATTACGGTGAA--TTACAGGGAAGCCTACGGTATGTTTG 604 Query 68554 TATGCAACTCGATT-TGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACT 68612 ||||| || ||||| || ||||| ||||| | ||| | ||||| || Sbjct 605 CTTGCAATGGTATCCTGTTT-AACCACGAAAGTCCGGTTCGCGGCGAAACCTTCGTCACG 663 Query 68613 CGTAAAATCACGAAGGTG--GTCGCGAATATTTTCAATGGTGTCGAA----AAATGCATG 68666 || || || || | ||| | ||||| || || | | | | | |||| | Sbjct 664 CGCAAGATTAC--ACGTGCAGCGGCGAAGATCG-CATTAGGATTGCAGGACAAAT---TA 717 Query 68667 TATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 68726 | | | || ||| || ||| || | ||||||||| | || || |||||||||||||| Sbjct 718 TTTTTAGGAAATCTATCTGCGCAACGCGATTGGGGACACGCTAAAGATTACGTAGAAGCG 777 Query 68727 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACA 68786 |||||| | |||||||||||||| | || || || || || |||||||| || || Sbjct 778 ATGTGGCTTATGCTGCAACAAGAAAAACCCGAAGATTACGTCATTGCAACCGGAGTTACT 837 Query 68787 ACGAGCGTTCGTGAGTTCGT 68806 || ||||| ||||| ||||| Sbjct 838 ACTAGCGTGCGTGATTTCGT 857 >seq416309 Length=254 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | ||| |||| ||| | | ||||||| | || || Sbjct 245 ATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACGCTCTGCCTTGTGCC 186 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | ||||||||| | | |||||| | |||||||| || ||||| |||||||| | Sbjct 185 CTGCTCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTG 126 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| || || | |||| | ||||| ||| |||||||| | ||| |||||| Sbjct 125 CTCCTCGCACTCGGCAACAAGAAGTTCTACAATGCCACCAACCCCTTCGACTTCATGGAG 66 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| || || || || || ||||||||||| ||||||||| | || || || Sbjct 65 AACATCTCCCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCA 10 >seq59864 Length=157481 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 243504 CATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCT 243563 |||| | || || || || | | | | ||| ||||| ||||||| | || ||| ||| Sbjct 39634 CATCTCCGAGGCCGTGGATATCAAGAGGGAGTTCATCTGCGACGTGCTCCCCTGCGCGCT 39575 Query 243564 TATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 243623 | || ||||||| || |||| | ||||||||||||| ||||| | ||||||| | | Sbjct 39574 CGTGGGTATGAACTTCGACCTCACGAGACAGTACATCGAGTTCGTCGTCGACCGCCTGCT 39515 Query 243624 CATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCT 243683 ||| ||| | || | |||| |||| | ||| ||||| || | || |||||||| Sbjct 39514 CATGGCGTTGGGCTGCAAGAAGCTGTATGATGCCACCAACCCATTCGACTGGATGGAGCT 39455 Query 243684 CATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || || | || || || ||| ||||||| ||||| || Sbjct 39454 CATCTCCCTGTAGGGCAAGACCAACATCTTCGAGAAGCGCGT 39413 >seq61564 Length=261189 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 243549 TATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGT 243608 ||| || ||| ||| | ||||||||| || |||||| | ||||||||||| ||||| Sbjct 91022 TATCCCTTGCATGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGT 91081 Query 243609 AGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654 ||||||||| | ||||| ||||| || || |||| |||||||| Sbjct 91082 CGCCGACCGCTTGTTCATGGCGCTGGGCTACAAGAAGTTGTACAAC 91127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1095825682776350