Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_010105.1 Length=170523 Score E Sequences producing significant alignments: (Bits) Value seq65234 152 6e-32 seq260686 120 3e-22 seq93888 98.7 1e-15 >seq65234 Length=1614 Score = 152 bits (168), Expect = 6e-32 Identities = 266/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 141949 TAGTCCATATGACGAATACGGTTCTCATCGACACCTTTGTTGTTTTTCAAAACGAGCAGA 142008 || || | |||||| | | || || || | ||| | || ||||| ||||| | | | Sbjct 674 TAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 733 Query 142009 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 142068 ||||||| ||| | |||||| || || ||| || |||| || || || || | | |||| Sbjct 734 TTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCA 793 Query 142069 CCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTA 142128 ||||| ||||| ||||| || || | ||||| ||||| | || |||||| |||||| Sbjct 794 CCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTA 853 Query 142129 TGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATA 142188 || |||| || | | ||| || ||| ||| ||||| |||| |||| || Sbjct 854 TGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATG 913 Query 142189 CCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTGGCAGTTTTGTTAATAGAT 142248 || || ||||| |||| ||||| |||| | |||| | | || |||||||| Sbjct 914 CCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAG 973 Query 142249 TTCAGCGAGTCGCCTGC---TTCAATAACCACACAAGAACTAAATTGACGAGTTGGAGTA 142305 || | | | |||| |||||| | ||||||||||||||||||||||||||| || Sbjct 974 TTTA---AATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTT 1030 Query 142306 CGTGCACCAGCCATAATAGGAGTAGG 142331 | | | || | |||||| || || || Sbjct 1031 CTTACTCCTGACATAATCGGTGTGGG 1056 >seq260686 Length=13603 Score = 120 bits (132), Expect = 3e-22 Identities = 278/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 141924 CATCAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACC 141983 |||||| | ||| | ||| | ||||||||||||||||| | ||||| | || || || Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 141984 TTTGTTGTTTTTCAAAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 142043 |||||| |||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 142044 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 142103 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 142104 TTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTC 142163 || |||| ||||| ||||| || ||||||| || || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 142164 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 142223 ||||| || ||| |||| || || ||||| ||||| | ||||| ||| | | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 142224 TGAGTTGGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGA 142283 | | ||| || |||||| || | || |||||| ||||| | || || || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 142284 ACTAAATTGACGAGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAACCT 142342 || || || || || || || || | || | |||||| || || |||| ||||| || Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 >seq93888 Length=1140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 185/265 (70%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 143539 TTGTTCAACGTGATTAGAATAGATATGCGTATTGCCGCCTGAGAACACTAAATCGCCCGG 143598 |||||| | |||||||||||||| ||||||| ||| |||| | || |||||||| | Sbjct 284 TTGTTCTAAGTGATTAGAATAGAGGTGCGTATCGCCCCCTGTCCAAACAAAATCGCC--G 227 Query 143599 AATA--AGATTACACATCTTAGCTACAATATGCACAAG-AGCGGCGTAAGAGGCGATATT 143655 | | |||| |||| || ||| || ||||| || || |||| | || ||||||||| Sbjct 226 ACTTCGAGATCACACTGCTGAGCGACCATATGGACCAGTAGCG-CATAGCTGGCGATATT 168 Query 143656 AAATGGCAATCCTAAGAACACGTCAACAGAACGTTGGTACCACTGGAGGTCAAGATGGCC 143715 ||| || || ||||| || || ||| ||| || || || |||| || | ||| Sbjct 167 AAAGGGTAAGCCTAAAAAGACATCACAAGAGCGCTGATAGAGCTGGCAACTGAGTTTGCC 108 Query 143716 ATT-ACGAACGTTGAACTGATAAAAACAATGACATGGTGGAAGAGCCATCTGGTCGATTT 143774 ||| ||| |||| ||| || |||| ||| || |||| || ||||| | || | | Sbjct 107 ATTCACG-ACGTAGAATTGGAAAAAGGCATGGCAAGGTGCCAGCGCCATTTTATCTAACT 49 Query 143775 CAGCCGGGTTCCATGCGGATACGAT 143799 | | |||||||| |||||||| Sbjct 48 CTCCAACATTCCATGCCGATACGAT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542141252250280