Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq121512 158 1e-33 seq271511 95.1 1e-14 seq170665 86.0 7e-12 >seq121512 Length=219671 Score = 158 bits (174), Expect = 1e-33 Identities = 314/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 212588 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 212647 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | || ||| || |||| | |||| || Sbjct 212648 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 212705 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 212706 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 212765 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| ||| |||| || |||| || |||||||| || |||||| || Sbjct 212766 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCG 212825 Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | | | | |||| | | ||| | | ||| | || ||| || ||| || Sbjct 212826 AAGACGCGGGACTCGTCCAGCT-TGCCGCGGAGGATGTCGTAGAGGAGG--CA-GGCGAA 212881 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 212882 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 212941 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| || |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 212942 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 213001 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 213002 GACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 213035 >seq271511 Length=5505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 277/418 (66%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 10742 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801 |||| ||| |||||||| ||| || ||| || | || ||| |||||||| ||| Sbjct 4246 ATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCGTCCT 4187 Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861 || || || || || ||| || | ||| ||||| || || ||||| || | || Sbjct 4186 GGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTTGCGGCGATAACGATAATA 4127 Query 10862 CCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCG 10918 || |||||| || || |||||||||||| || | || || | || || || Sbjct 4126 CCT---TCGTTACCTTCGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTGCTCA 4070 Query 10919 CGTTCATCAT-TCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 10977 ||||| |||| || || || ||| || | || || |||||| ||||| || || Sbjct 4069 CGTTCGTCATGTCCACCGCCTAA-ACCGGCGCCACGCTGACGACCGACTGCGTCGATCTC 4011 Query 10978 ATCGATGAAAACGATACACGGTT--GATTTTCACGGGCAACTTCAAAGATATCTCGGACT 11035 |||||| || | ||| ||||| | |||| ||| ||| || || || || || Sbjct 4010 ATCGATAAAGATGATGCACGGAGCCGCTTTTTT--GGCCTGTTCGAACATGTCACGCACA 3953 Query 11036 CTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAA 11094 | ||||||||||| ||||||||||||||||| | | ||| | || | | ||| Sbjct 3952 CGGGATGCACCGACACCGACAAACATTTCCACAAAGTCAGAACCGG-AGATGGTAAAGAA 3894 Query 11095 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 || || || | |||||| || || ||| || || | ||| || || || || ||| Sbjct 3893 AGGCACCTTCGCTTCACCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTACCCGGT 3836 >seq170665 Length=56631 Score = 86.0 bits (94), Expect = 7e-12 Identities = 194/289 (67%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 42215 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 42274 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 | |||| |||||| || | | ||||| |||||||||||||||| || ||||||| Sbjct 42275 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 42334 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTG-----CGTTGCTTACCG 10963 || || || | |||||| ||| | |||||| | ||| | |||| | || Sbjct 42335 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 42388 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AA 11021 || || ||||||||||| | || || || || || ||| || ||| |||| | Sbjct 42389 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGA 42446 Query 11022 AGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| ||| || || | |||||| ||||| |||||||| ||||| || Sbjct 42447 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 42495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593625956730680