Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq497144 150 5e-32 seq153502 129 2e-25 seq136258 102 2e-17 seq83212 86.0 2e-12 seq55358 82.4 2e-11 >seq497144 Length=1636 Score = 150 bits (166), Expect = 5e-32 Identities = 240/340 (71%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 32826 ACCGCCAAGCATCTGCATGACGCCACCCATTTGTGGAATGACAATCTCAGTGGTGTATTT 32885 |||||| |||||||||||| ||| || | | || |||| || |||||||| || Sbjct 1451 ACCGCCCAGCATCTGCATGGTGCCGCCAACGTT---AACCACAACTTCGGTGGTGTACTT 1395 Query 32886 GTCCACGCCG--CTGCTGTCAGTCCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACC 32943 || ||||| ||| ||||||||| ||||| || | ||| ||||| ||||||||| Sbjct 1394 CTCAACGCCAGCCTG--GTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACC 1337 Query 32944 TGCGACCCTTTACGAAGATACTCTCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACT 33003 || || |||||||| || || || || || ||||| || | || ||||| | ||||| Sbjct 1336 TGAGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACG 1277 Query 33004 CGATGCCATTCAGTATGTTCTTTCTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGAT 33063 || ||||||||||| | ||||| |||| || || |||||||| ||| || || Sbjct 1276 CGGTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAG 1217 Query 33064 GTTGCAACAGAAAGGTTCGCAATTGCAGAGCCTGATGCTGAA--TATTTAACTTCAGGGT 33121 || || | || | ||| |||| ||| ||| || | | | || |||||| |||| Sbjct 1216 GTAGCCAGAGTGATGTTGGCAACGGCACCGCC--ATTCGGCATGTAGCGAACTTCCGGGT 1159 Query 33122 CATTTCCGAGAGTGCCGACAATGATTACTTTATTTACGCC 33161 | | || ||| | ||||| | |||||||| |||||||| Sbjct 1158 CCTGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 1119 >seq153502 Length=4143 Score = 129 bits (142), Expect = 2e-25 Identities = 187/261 (72%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 32907 CCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTC 32966 ||| || || || || ||||| ||||| ||||||||||| || |||||||| ||||| || Sbjct 2000 CCATTTGCGCGTACGCAGTTGACCTTCGATATAAACCTGAGAGCCTTTACGCAGATATTC 2059 Query 32967 TCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTT 33026 || |||||||| || | ||| ||||| | ||||| || |||||||||||| ||||| Sbjct 2060 GCCAGCAACTTCTGCTAATTTACCGAACAACACAACACGGTGCCATTCAGTAATCTCTTT 2119 Query 33027 CTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAAT 33086 ||||| || |||||||| || ||| ||||| ||||| | | || ||| | | Sbjct 2120 ATTTTCACCGGTTTGCTTATCACGCCAGCTTTCAGAGGTTGCCAGTGTAATGTTTG---T 2176 Query 33087 TGCAGAGCCT-GATGCTGAATAT--TTAACTTCAGGGTCATTTCCGAGAGTGCCGACAAT 33143 ||| ||| || | |||| ||||| || || | || | | | ||||||| Sbjct 2177 CACAGCCCCTCCATTTGGCATATACCGGACTTCTGGATCTTGACCCAAATTACCGACAAG 2236 Query 33144 GATTACTTTATTTACGCCGCG 33164 || ||||| ||||||||||| Sbjct 2237 AATCACTTTGTTTACGCCGCG 2257 >seq136258 Length=1331 Score = 102 bits (112), Expect = 2e-17 Identities = 181/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 32907 CCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTC 32966 ||| ||||| ||||| || || ||||| ||||| |||||||||||||| || || || Sbjct 94 CCATTTACGGGTGCGCAGCTGGCCTTCGATATAGACCTGCGACCCTTTTTTCAGGTATTC 153 Query 32967 TCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTT 33026 || || ||||| || | ||| || || | ||| || || ||||||||||| ||||| Sbjct 154 ACCCGCGACTTCAGCCAGTTTGCCAAACAGAACCACACGGTGCCATTCAGTGATCTCTTT 213 Query 33027 CTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAAT 33086 ||||| || || |||||||| ||| || || || || | | || ||| |||| Sbjct 214 GTTTTCACCGGTCTGCTTGTCGCGCCAGCTTTCCGACGTAGCCAGCGTAATGTTGGCAA- 272 Query 33087 TGCAGAGCC-TGATGCTGAATAT--TTAACTTCAGGGTCATTTCCGAGAGTGCCGACAAT 33143 ||| ||| || | |||| ||||| || || | || ||| | ||||||| Sbjct 273 --CAGCGCCACCATTTGGCATATAACGTACTTCCGGATCCTGACCCAGATTCCCGACAAG 330 Query 33144 GATTACTTTATTTACGCCGCG 33164 || ||||| || ||||| || Sbjct 331 AATCACTTTGTTAACGCCACG 351 >seq83212 Length=3491 Score = 86.0 bits (94), Expect = 2e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 24437 TTCCGCAGTGACCAGCCTGCGGTTGGGGCGCCAATCTTTCAGAAGCTGACAACTGATATT 24496 ||||||| |||||| || |||||| ||||||||||| |||||||| || || || Sbjct 159 TTCCGCACTGACCATCCACAGGTTGGTGCGCCAATCTTCCAGAAGCTTACTGACGACCTT 218 Query 24497 GCGGCCACATGGAGCCTGACGTGGGTTTTTACACTGGCTGAGGAGCGCGCATTTATCCAA 24556 | ||| |||||||| ||| | || |||| | | || | || || ||| ||| Sbjct 219 AAATCATCATTCAGCCTGACATGGATATTCACACGTGATCAGCACCGTGCCTTTTACCAG 278 Query 24557 TGGTTGCGTAGTCCTGGCTACCTCAACAAATGCAACAACTGGTTCACCATGA 24608 |||||||| |||||| ||| || | || |||| | ||||||| ||||| Sbjct 279 TGGTTGCGCAGTCCTAACTATCTGGATAACGGCAATCAGTGGTTCAGCATGA 330 >seq55358 Length=10594 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 22390 GCGGAATCCACAAAAGAACTATCCCGCGAGCAAGCCATCCTCAACGCTCAGCAATCGCTT 22449 || |||||||||| ||| || || ||||| || ||||| | || ||||| || ||| Sbjct 8135 GCCGAATCCACAAGAGAGTTAAGTCGTGAGCAGGCAATCCTAACAGCGCAGCAGTCTCTT 8194 Query 22450 GGCAAGGCCGCCACTCAGGAGCAGATAAAACTTGCTGGCGAGTACGCTGC 22499 || | ||||| ||||||| | ||||||||||||||| | |||||||| Sbjct 8195 GGTAGTGCCGCAACTCAGGCTGACATAAAACTTGCTGGCCAATACGCTGC 8244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143187685474826