Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq255299 113 1e-20 seq292125 105 2e-18 seq480874 80.6 7e-11 >seq255299 Length=12406 Score = 113 bits (124), Expect = 1e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 25685 CTTCTAAGCCGTAGGTCACTGGTTCGAATCCAGTAGGGCGTACCAATAA-AATCAAGGGG 25743 ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| | Sbjct 3338 CTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGTAGGGCGTACCAATAATTTTCAATCAG 3279 Query 25744 TTACGTAGTT-TTGTCTCCTAGGAATTATTTAAAAGTGCCAGATTAGTGACATCGTTTGC 25802 ||||| | || || || ||| || ||| | ||| ||| | || |||| Sbjct 3278 TTACGCAATTCTTAATCCCGCCTGATTCTTCCCCTGTGTCGTATTTGTGTCGTCAGTTGC 3219 Query 25803 CAACGCCTCGTCAATTTTCTTGGCATGCTCAGTCAGGTGGCTGGGCGAAAGGTGTGCGTA 25862 ||| | ||||||||||| || ||||| ||||| || | |||| ||||| || || Sbjct 3218 CAAAAGCGCGTCAATTTTCCGTGCGTGCTCGGTCAGATGATTCGGCGCCAGGTGAGCATA 3159 Query 25863 ACGACGTACCATTTCGATAGATTCCCAGCCGCCCATTTCCT 25903 || || |||||||| || ||||||||| | || |||| Sbjct 3158 GCGTCGGACCATTTCAATGCTTTCCCAGCCTCTCAGATCCT 3118 >seq292125 Length=1950 Score = 105 bits (116), Expect = 2e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 10585 GAGTAAATGATGGTCAGTAAGAAGAAAATGGGACGTCCAAGCAAGTTAACCGTAAGCCTC 10644 || ||||| |||| | ||| || ||| | || || ||||| |||||| ||| ||| || Sbjct 303 GAATAAATAATGGCGACTAAAAACAAAGTTGGTCGCCCAAGTAAGTTAGCCGAGAGCATC 244 Query 10645 GAAAAGGCCAAAGCCTATTTAATGGGGGAATACAAAACCGTGGGGGATGTTGTGCCTAAT 10704 |||||||| |||| || |||||||| | |||||||| || | ||| ||||| || | Sbjct 243 GAAAAGGCTAAAGAATACTTAATGGGCGGCTACAAAACGGTAGAGGACGTTGTCCCGAGC 184 Query 10705 ATCGCTGGCTTAGCGTGTTATCT 10727 | ||||||||||| |||||||| Sbjct 183 GTGGCTGGCTTAGCCTGTTATCT 161 >seq480874 Length=465 Score = 80.6 bits (88), Expect = 7e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 25685 CTTCTAAGCCGTAGGTCACTGGTTCGAATCCAGTAGGGCGTACCAATAA 25733 ||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 459 CTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGTAGGGCGTACCAATAA 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126697228018058