Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq435986 345 1e-90 seq283163 327 3e-85 seq318940 291 2e-74 seq313109 289 7e-74 seq118539 206 7e-49 seq403079 196 1e-45 seq418483 143 7e-30 seq326174 86.0 2e-12 seq379171 80.6 7e-11 >seq435986 Length=275 Score = 345 bits (382), Expect = 1e-90 Identities = 241/274 (88%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 11999 TTTGCAGGCGATCTGCGTTTCTGGGAGCACGGCGCGAACGGCGCCCGCGTTCCCGTCATC 12058 || ||||| || ||||| ||||||||||||||||| |||||| ||||| |||||||| Sbjct 2 TTCGCAGGTGACCTGCGCTTCTGGGAGCACGGCGCCGACGGCGTTCGCGTCCCCGTCATT 61 Query 12059 CCGGAGCCGACCGACAAGTTCGGCAACCAGCCGCTGGAGCAGTCGTCGCTGACGTTCAGC 12118 || ||||| ||||||||||||||||||| || ||||||||||| |||||||| |||||| Sbjct 62 CCCGAGCCCGCCGACAAGTTCGGCAACCAACCCCTGGAGCAGTCCTCGCTGACCTTCAGC 121 Query 12119 TACGAAGCTGGCGACTCGGTGGAAATCAAGAGCAAGCGCCGCGACGCGCGCTATCAGCAG 12178 |||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 122 TACGAAGCCGGCGATTCGGTGGAGATCAAGAGCAAGCGCCGCGATGCGCGCTATCAGCAG 181 Query 12179 ATCATCCACAAGGATTCCAACCCTGGTGTCACCAGTGTCTCGATCACCGCGCTGGAAGTT 12238 |||||||||||||| ||||| || |||||||||| || |||||||| ||||||||||| Sbjct 182 ATCATCCACAAGGACTCCAATCCGGGTGTCACCAACGTTTCGATCACGGCGCTGGAAGTG 241 Query 12239 CCGCCGGCCATCCTGGCCCGCATGCTGTACGGCA 12272 ||| ||||| || |||| |||||||||||||||| Sbjct 242 CCGACGGCCTTCTTGGCTCGCATGCTGTACGGCA 275 >seq283163 Length=505 Score = 327 bits (362), Expect = 3e-85 Identities = 370/502 (74%), Gaps = 32/502 (6%) Strand=Plus/Minus Query 17842 GATACGGCTGCGCCGGACGTGCTGAAGGATGCGATCGGCGTGCTGATCGACCCGCCGAGC 17901 ||||| || | |||||||| ||||||||||| ||| | ||||||||||| || || | Sbjct 502 GATACCGCGTCACCGGACGTCCTGAAGGATGCCATCAGTGTGCTGATCGATCCTCCTGCC 443 Query 17902 GACCCTCGTGTGACCGTAAGCATGTTCGCGACCGGGTCGTACAGCGATGTTCGGCTGGAT 17961 || || ||||||||||| |||||||| || |||||||| ||||||||||| ||| ||||| Sbjct 442 GATCCGCGTGTGACCGTGAGCATGTTTGCTACCGGGTCCTACAGCGATGTGCGGTTGGAT 383 Query 17962 GCCAAGAACCGCGTCGAGAGCTACATCACGCGCGGCACCGAGTCCAGGTTCATCCTTATG 18021 |||||||||||||| |||||||| ||||| || ||||| |||||| | |||||| | ||| Sbjct 382 GCCAAGAACCGCGTTGAGAGCTATATCACCCGTGGCACTGAGTCCCGCTTCATCTTGATG 323 Query 18022 GGCAACCATTTCAGCGGTCAGATGACGATGCTGGTCTATACCACGTCAGATGCGCCCAGC 18081 |||||||| |||| || |||||||||||| | || || | || || ||||||||| Sbjct 322 GGCAACCACTTCATTGGCCAGATGACGATGATCGTGTACGCGACAAAGGACGCGCCCAGC 263 Query 18082 CCCGACATCAA-----------------------TGACAACTTC---AGCCTGT------ 18109 || |||| || ||||||| | | ||||| Sbjct 262 CCTGACAACANNNNNNNNNNNNNNNACCCCGCCCTGACAACACCGAAACCCTGTCGTTGC 203 Query 18110 TGACCCTCGCCGGCTCCGGGCATGATGAGGCGGAGCAGTACGTTCGCGTGAAGACCGTTC 18169 |||| || ||||| | || |||| || |||||||||||||| || |||||| | || | Sbjct 202 TGACACTGGCCGGTACGGGTTATGAGGAAGCGGAGCAGTACGTCCGGGTGAAGTCGGTAC 143 Query 18170 TCTCCAGGACCACTCGCACCTTCACGGACGATCAAGGCGCATTCGAGCGCGATGTTCTCG 18229 | || |||| || ||||| ||||| || || ||||| || || || || || || || | Sbjct 142 TGTCGCGGACGACGCGCACGTTCACCGATGACCAAGGGGCGTTTGATCGTGACGTGCTGG 83 Query 18230 TGATCGAGTTGATCAACCCGCTGCTGCGAAACTTCTTCGGACAGGAGGTCGTGCGCTACA 18289 ||||||| |||||||| | |||| | |||||| ||| |||||||| ||||| | || Sbjct 82 TGATCGAACTGATCAACGCATTGCTTCACGACTTCTACGGGCAGGAGGTGGTGCGTTTCA 23 Query 18290 GCGCGACAAAGCCGGCCACCCG 18311 ||||||| ||||| || || || Sbjct 22 GCGCGACCAAGCCTGCGACGCG 1 >seq318940 Length=206 Score = 291 bits (322), Expect = 2e-74 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1758 CCACCTCAAGAACAAGCTCAAGGCGCTGATCACCGGCGATCGCATCCGCATCAACCCCAA 1817 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 206 CCACCTGAAGAACAAGCTCAAGGCGCTGATCACGGGCGATCGCATCCGCATCAACCCGAA 147 Query 1818 GAACATCCAGGCCTACGAGGAAGACAACCACGCCAACCTGGTCTTCCTCTCAAACGAGGC 1877 |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 146 GAACATTCAGGCCTACGAGGAAGACAACCACGCCAACCTGGTGTTCCTCTCGAACGAGGC 87 Query 1878 GATGCCGGTCGTGCTGGAAGAGGATGACCGCCGCCATGCGGTGATCTGGACGCCAGATAA 1937 ||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct 86 GATGCCGGTGGTGCTGGAAGAGGACGACCGTCGCCACGCGGTGATCTGGACGCCGGACAA 27 Query 1938 GCTGAGCCAGGAGTTCTATTCCGAGG 1963 || || || |||||||| |||||| Sbjct 26 ACTCAGTCAAGAGTTCTACACCGAGG 1 >seq313109 Length=205 Score = 289 bits (320), Expect = 7e-74 Identities = 187/205 (91%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 1981 AACGGCGCGACGGCGGCGCTTCACCACTACCTGCTGCAGGTTGACCTGACCGGCTTTACC 2040 ||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 1 AACGGCGCGACCGCAGCGCTGCACCACTACCTGCTGCAGGTTGACCTGACCGGGTTCACC 60 Query 2041 AACGGCACCAATCCGCCGATGACGCAGGCCAAGGAAGAACTGATCGGCCTGAGCCAGGAC 2100 |||||||| ||||||| ||||| || || |||||||| ||||| ||||||||||||||| Sbjct 61 AACGGCACGCATCCGCCAATGACCCATGCGAAGGAAGAGCTGATTGGCCTGAGCCAGGAC 120 Query 2101 AGCCCGCAGCGATTCCTGGACGAGCTCTACGGCGATGACATTCCCGGGCTGAAACCCATG 2160 ||||| || || ||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 121 AGCCCACAACGCTTCCTGGACGAGCTCTACGGCGATGACATCCCCGGGCTAAAACCCATG 180 Query 2161 CCGGCGCTGTCGAAGGAGTGGTACG 2185 ||||||||||||||||||||||||| Sbjct 181 CCGGCGCTGTCGAAGGAGTGGTACG 205 >seq118539 Length=1001 Score = 206 bits (228), Expect = 7e-49 Identities = 380/551 (69%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 21246 TGGAGGTGCCCAGTGACGTTGGTACCAATCGTCTACCGCAGCACTGATCCGGGAGCGCCT 21305 |||||||||||||||| ||| | || | ||| || ||||||||||| || || ||||| Sbjct 1001 TGGAGGTGCCCAGTGAGCTTGATCCCCACCGTATATCGCAGCACTGACCCCGGTGCGCCC 942 Query 21306 ATCCTTAACGGCCAGGCCGGCTCATTGCTTGCCGTGCTCAACGCGATCCTGGTGACAGGG 21365 | || |||||||||||||| |||||| | || |||| | || | |||||||| || Sbjct 941 GTTCTGAACGGCCAGGCCGGATCATTGATCGCGCTGCTGCATGCCGTGCTGGTGACTGGT 882 Query 21366 TATGGGGATGGAGCATCCGCGAAGCCTGGCGCAGGCTGGACTCGCCCCTACGCCAGTTCT 21425 || || |||| |||||| | ||| ||||| ||||| || || || |||| | Sbjct 881 TACGGTACGGGAGAATCCGCCAGGCCACCGGCAGGATGGACACGGCCTTATGCCAACGCA 822 Query 21426 TCTGTGCAGGTGTTCCGAAACAGTGCTACGACGGGCTCTGGCACCTATTTGCGAGTGCGC 21485 ||||| || | ||| |||||| | || || || ||| | || |||| || || Sbjct 821 GGCGTGCATGTTTACCGCAACAGTCCAGTGAGTGGGTCAGGCGCATACCTGCGGGTTTGC 762 Query 21486 GACGATGCATCGGCTGCAACGTTGAACACGGGTTGTCTGGCTCAATTGTTTGCCTACAGT 21545 || || ||||| ||| | | | | |||||||| | || ||||| |||||||||||| Sbjct 761 GATGACGCATCTGCTCCCATGCTCAACACGGGCCGGCTCGCTCAGGCATTTGCCTACAGT 702 Query 21546 TCGATGTCCGACATTGACACCGGCGCGGATCAAACCCCCAGCGCTGCGCTACAGGCCCGT 21605 ||||| | ||||||| |||| | | |||| || || ||||| || | ||||| || Sbjct 701 GCGATGAGCAGCATTGACTCCGGTGAGAATCAGACACCAAGCGCGGCATTGCAGGCGCGA 642 Query 21606 GGCTCATTCATTGCGAAGGCGCCGACAACA-ACCGCCGACGCTCGGAGCTGGATTGCCAT 21664 || || || || || ||| | ||| | || || || | || ||| ||||| | | Sbjct 641 GGATCGTTGATCGCCAAGTCTCCG-CTGCAGACGGCAGCGGCGCGGCCTTGGATGGTGGT 583 Query 21665 AGCGACGGAGATTGGTTTCTACCTTTTTACGGCGTGGAGCA-ACTTTGGCAAC-GGCCTT 21722 || || ||||| || |||||||| || ||| | || ||| | | || || || | Sbjct 582 GGCCACAGAGATCGGGTTCTACCTGTTCACGTCCTG--GCATTCCTACGCGACAGGGATG 525 Query 21723 GGCCCCTATTACTACGGCGACATTGACACGACAGTATCGGGCGATGTTTTCCCCTTCGTG 21782 ||| | || |||||||| ||||| || | || | || |||| ||||| || | | Sbjct 524 GGCGCTTACTACTACGGAGACATCATCAGTAGCGTTCCAGGAGATGCGTTCCCATTTGCG 465 Query 21783 ATGTTCGGTTC 21793 ||||||| || Sbjct 464 GTGTTCGGATC 454 Score = 127 bits (140), Expect = 5e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 22008 CGTTCATATGGCTCCGGGGTATACCCTGTGGGCCCAGACCGTGCCCACGGGGGATACAAC 22067 || || || || || || | |||| |||||||| || | | ||||| || |||||| Sbjct 248 CGCTCGTACGGGTCGGGTGCCTACCTCGTGGGCCCCGATCCAACGCACGGCGGTTACAAC 189 Query 22068 TACATGCGCGCAGCAGTGCGTGAAGCGCCGTTCGCCTTGCGTGGTCACTTGCCGGGAATT 22127 ||||| || ||| || || || ||||| | | | || || | | ||||| | Sbjct 188 TACATTGATGCCATAGTCCGCGAGGCACCGTTTGGCATTCGCGGAAAGCTCCCGGGGGTC 129 Query 22128 CTGGTGCCGCTGCATGCCCGGCCGCACGCAGAGGGCAGCG-TAGTGCCCTTCATCGAAGG 22186 |||||||| ||||||| || ||||| |||| |||| ||| | || || ||||| || || Sbjct 128 GTGGTGCCGTTGCATGCTCGCCCGCATGCAGCGGGC-GCGCTCGTACCATTCATTGATGG 70 Query 22187 AATCGGGCTCGGCCAGTGGCTGGCTGTGAACTACAACGTTGTAGAGCCCGATGTCGCCGA 22246 || ||||||||||| |||||||||||||| |||||||| | | ||| || ||| || Sbjct 69 CATTGGGCTCGGCCAATGGCTGGCTGTGAATTACAACGTCGCCGCGCCGAATACCGCTGA 10 Query 22247 TCGC 22250 |||| Sbjct 9 TCGC 6 >seq403079 Length=243 Score = 196 bits (216), Expect = 1e-45 Identities = 178/222 (80%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 33997 TCTTCGGAAAACTCGCC-CTCGACCACGGCCAGGTCGAAGCCCTGCGCGAGGAAGAACGG 34055 ||||||| || ||||| | || | || |||||||||||| ||||| ||||| || || Sbjct 19 TCTTCGGTGAAGTCGCCGCACGTC-ACTTGCAGGTCGAAGCCTTGCGCAAGGAACAAAGG 77 Query 34056 TCGCAGTGATACCTCGCGACCGTCAGCCCACATCGGCACATCCGGATGGCACGGAATCTC 34115 ||||| || |||||||||| || |||| | ||||| || || || || ||||||| Sbjct 78 CCGCAGCGAAGCCTCGCGACCATCGCTCCACGTTGGCACGTCAGGGTGACAGTGAATCTC 137 Query 34116 GCCGTCGGCGTTGCGCGCCGGGAGACGACTTGGGTGGTATAGGCCCCGCCACGGGTCGGC 34175 |||||||||||||||||| ||||| ||||| |||||||| || || ||||||||||| || Sbjct 138 GCCGTCGGCGTTGCGCGCTGGGAGGCGACTGGGGTGGTACAGACCGCGCCACGGGTCAGC 197 Query 34176 CGGATCGACAGCGGTGCGGGACTGATTCCTGACCAGCTCCAG 34217 ||| || | ||||||||| ||||| ||||||||||||||| Sbjct 198 CGGGTCCATCACGGTGCGGGTCTGATCCCTGACCAGCTCCAG 239 >seq418483 Length=256 Score = 143 bits (158), Expect = 7e-30 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 19513 GGAAACCTGCGGGCCGTCTCGGTCGGTGATGC--CAGTGCCGACACGGTGTTGGGCTCGG 19570 || ||| || |||| | ||||| ||||| | ||||| ||||||| ||||||||| Sbjct 10 GGCAACGTGGTGGCCATTTCGGTGGGTGACACGACAGTGAG--CACGGTGCTGGGCTCGG 67 Query 19571 TGAACTATGCGACCGGGGCGGTAAGCCTGCAGGCTGGAAAGTTCATGGTCCGCCAGGTGT 19630 ||||||| ||||| ||||| | || ||||| || ||||| ||||| |||||||||| Sbjct 68 TGAACTACAACACCGGCGCGGTGACGCTTCAGGCCGGGAAGTTTATGGTTCGCCAGGTGT 127 Query 19631 CCTACCCGCAGTACGAGCTTCAGTCCGGTCGGCTGAAGGTGGTGGGGTACGGCCGCTTGG 19690 |||| ||| || ||||| || || || ||||| ||||| || || ||| ||| |||| Sbjct 128 CCTATCCGATCTATGAGCTGCAATCTGGCCGGCTCAAGGTCGTTGGCTACAACCGATTGG 187 Query 19691 ATGTGCTCGCTGAGTTTTCTGCTGGCACTATCATCTCAGTCGCTTGGCTG 19740 |||| | || | || || ||||| || |||||||| || | |||| || Sbjct 188 ATGTTTTGGCCCACTTCTCGGCTGGAACGATCATCTCGGTGGGTTGGATG 237 >seq326174 Length=208 Score = 86.0 bits (94), Expect = 2e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 11273 CACTGAGGGTGTGAGGGTCTATGTCGATCGCGACGTAGAGACGATCGGCGAGCTGCGCCA 11332 ||| ||||| ||| | | ||| || || |||||||| ||||| ||||| || |||||||| Sbjct 174 CACCGAGGGCGTGCGTGCCTACGTGGAGCGCGACGTTGAGACTATCGGTGAACTGCGCCA 115 Query 11333 GTTCGTCGCCGGCCGTGTCGAGGTGTCCTTTCTGCGTGTAGATGTCGAACCTGAGCAGGG 11392 |||| || || ||||| ||| | | | |||||| ||||| | ||||| ||||| Sbjct 114 GTTCAGGGCAGGGCGTGTTGAGATCGCGTACCTGCGTTCGGATGTAGCGCCTGACCAGGG 55 Query 11393 CGACCGTGTAGAGGT 11407 ||| || | ||||| Sbjct 54 CGATCGCTTCGAGGT 40 >seq379171 Length=229 Score = 80.6 bits (88), Expect = 7e-11 Identities = 123/173 (71%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 22532 ATCGGTACGGATGTGGCTGGGAGGGTCAATTCAGCCATCCAAGACTGGGTGGTGCCAGCA 22591 ||||| || ||| || ||||| ||||||||| ||||| ||||| ||| | || ||| Sbjct 182 ATCGGCACAGATTTGTCTGGGGCGGTCAATTCGGCCATTCAAGATTGGATCACCCCGGCA 123 Query 22592 AAGATGGAGCCGTGATGCCAGGGGGCGGTGCATTCGTTCGGCTGAACCTTGGCCCG-CGA 22650 ||||||||| ||||| | | | || | |||||| || | ||||| || ||| | Sbjct 122 AAGATGGAGAGCTGATGGCGGCGTCGGGAGGATTCGTGGGGGTCAACCTCGGTCCGATGT 63 Query 22651 TTCAGTGGTGCGGGTGGGTTCACGCCACTGAATCTCGGTGTCGACTGGGATGA 22703 | || || || || || ||| ||| || ||||| || ||||| ||||| || Sbjct 62 TCCAAGGGAGC-GGCGGTTTCGTGCCGCTCAATCTGGGCGTCGAGTGGGACGA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128033260450898