Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq79071 212 7e-50 seq222524 187 3e-42 seq65234 167 2e-36 seq209331 134 1e-26 seq1462 134 1e-26 seq213894 129 6e-25 seq260686 98.7 1e-15 >seq79071 Length=852 Score = 212 bits (234), Expect = 7e-50 Identities = 158/185 (85%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 63141 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63200 ||| | ||| |||||||||||||| | || |||||||||||||| || || ||||| || Sbjct 181 TTAAAGACTTTCAGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGA 240 Query 63201 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63260 |||||| || || ||||| || || |||||||| |||||||||||||| ||||| ||||| Sbjct 241 GTTAAAACGCACGGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATG 300 Query 63261 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63320 ||||||||||||||||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 301 TTTAACTGCATCTTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACC 360 Query 63321 TTCAA 63325 ||||| Sbjct 361 TTCAA 365 >seq222524 Length=8439 Score = 187 bits (206), Expect = 3e-42 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63148 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 63207 || |||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 4032 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 4091 Query 63208 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 63267 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 4092 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 4151 Query 63268 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 63323 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 4152 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 4207 >seq65234 Length=1614 Score = 167 bits (184), Expect = 2e-36 Identities = 288/416 (69%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 140715 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 140774 ||| || | ||| | ||| ||| ||||||| | |||||| | | |||||||| | || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 140775 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140834 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 140835 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 140894 ||| || || || || | || |||||| || || || ||||| || || | || || || Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 828 Query 140895 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140954 ||| ||||||||||| || ||||| | |||| || | | || | ||| Sbjct 829 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 888 Query 140955 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141014 ||| ||||| |||| ||||||| || ||||| || |||| ||| | ||||| ||||| Sbjct 889 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 948 Query 141015 TG---AAGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGC---CTCAATAACAAC 141068 || || | ||| ||| ||||| |||| ||| | |||| ||||| | || Sbjct 949 TGCACTAGTTGTAGC---ATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACAC 1002 Query 141069 GCATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGTA 141124 || |||||||| || |||||||| || | || | |||||| || || |||| Sbjct 1003 ACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA 1058 >seq209331 Length=9407 Score = 134 bits (148), Expect = 1e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 63153 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 63212 ||| ||||| || | || || || |||||||||| |||||| ||||||||||| || Sbjct 315 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTGAGTTAAAGCGGAC 374 Query 63213 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 63272 || |||||||| || || |||||||||||||||||||| || ||||| | | || || Sbjct 375 CGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGATGTTCCATCGCGTC 434 Query 63273 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63326 ||| ||||||| || |||||||||||| ||||| ||||| ||||| || Sbjct 435 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 488 >seq1462 Length=4781 Score = 134 bits (148), Expect = 1e-26 Identities = 291/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Minus Query 140730 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 140789 ||| || || ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 1431 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 1372 Query 140790 AAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 140848 || || ||| |||||| |||||| ||||| ||||| ||| | || || || || | Sbjct 1371 GACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCC 1313 Query 140849 CACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 140908 | || | || || || ||||| ||||| || || ||||| || ||||| | || || | Sbjct 1312 CGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGA 1253 Query 140909 TAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATAC 140968 || ||| |||||| ||||||| | || ||| |||||||| | Sbjct 1252 TACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGC 1193 Query 140969 CAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCT 141028 || | || ||||| || || ||||||| || | |||| ||| || | | |||| Sbjct 1192 CAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGG 1133 Query 141029 TATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGCCGAG 141088 |||||||| | ||| ||| || ||| |||| |||||||| || || || |||| Sbjct 1132 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 1073 Query 141089 TTGGAGTACGGCAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACCG 141148 | || || || |||||||| || || || ||||| ||||| | || || || | Sbjct 1072 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGG 1013 Query 141149 CTTCATAAAAACG 141161 | |||||||| || Sbjct 1012 CATCATAAAAGCG 1000 >seq213894 Length=28734 Score = 129 bits (142), Expect = 6e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 63141 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63200 ||||| |||| ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 63201 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63260 ||| ||||| || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 63261 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63320 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 63321 TTCAAT 63326 |||||| Sbjct 8809 TTCAAT 8804 >seq260686 Length=13603 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 140725 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 140784 ||||| || || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 5584 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 5525 Query 140785 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 140844 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 5524 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 5465 Query 140845 CCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 140904 ||||| || | || ||||| ||||| || || || || ||||| || || || | || Sbjct 5464 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 5405 Query 140905 GGAATAACACCAGTATGGCGTACTTCACC 140933 ||||| || || ||| | ||||||| Sbjct 5404 GGAATGCAGCCGGTGTGGAATGCTTCACC 5376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535370965910640