Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq1462 178 1e-39 seq65234 170 2e-37 seq260686 149 7e-31 seq222524 87.8 2e-12 >seq1462 Length=4781 Score = 178 bits (196), Expect = 1e-39 Identities = 295/421 (70%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 139678 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 139737 ||| || || || || |||||||||||||| || ||||| | |||||| |||| || || Sbjct 1446 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 1387 Query 139738 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGA 139796 || || || | || ||| || ||||||| || || ||||| || |||||| | | Sbjct 1386 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 1328 Query 139797 GAGTCGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAAT 139856 | ||||| || || || || | ||||||||| ||||| || || ||||||||||| || | Sbjct 1327 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 1268 Query 139857 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 139915 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 1267 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 1209 Query 139916 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATG 139975 ||| ||||| |||||| ||||||||||| || || || | || || || | | Sbjct 1208 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 1149 Query 139976 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACAC 140035 || ||| | | || ||||||| | || || ||| ||||| | ||| || Sbjct 1148 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 1089 Query 140036 GAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATT 140095 || || |||||||| || || || || || || ||||| || || ||||||| || ||| Sbjct 1088 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 1029 Query 140096 T 140096 | Sbjct 1028 T 1028 >seq65234 Length=1614 Score = 170 bits (188), Expect = 2e-37 Identities = 302/438 (69%), Gaps = 2/438 (0%) Strand=Plus/Plus Query 139685 TTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTG 139744 |||||||| ||||| | |||||||||||||| | | || ||||| | || |||| Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 139745 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCC 139804 || ||||| || | | | |||||| |||| |||||||||||||||| | | ||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 139805 GCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAG 139864 ||||| || | || || ||||| || || || || || || | || || ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 139865 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 139924 || || ||| || |||||| |||| |||| | ||| | |||| || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 139925 ATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTT 139984 || |||||||| || || || || || || | || ||| || | |||||| | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 139985 GCTGTTTCGTTGAT-GCCCTGCAATGAGTCATCACTTTCGATCACCACACACGAACTAAA 140043 | ||| | || || | | ||| | || ||| ||| || | |||||| |||||||| Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAA 1014 Query 140044 TTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTTGCTTATT 140103 ||| || ||||| || | || |||| ||||||||| || |||||||| |||| | | Sbjct 1015 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 1074 Query 140104 CGCAACAGCATTATAAAA 140121 | || ||||||||||| Sbjct 1075 GGAAATTGCATTATAAAA 1092 >seq260686 Length=13603 Score = 149 bits (164), Expect = 7e-31 Identities = 314/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 139634 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 139693 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 139694 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 139753 || |||||||| || | |||||| | |||||| |||| || || |||||||| | | Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 139754 ACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCCGCCCCGCCA 139813 || | ||| ||||| | || | |||||| |||||||| | || ||||| || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 139814 CGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAGAATGGGATA 139873 || | |||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 5399 Query 139874 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 139931 ||| || || ||| ||||||| | |||| || ||| || || | Sbjct 5398 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 5341 Query 139932 CAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 139991 | ||||| || |||||||| ||||||| || ||||| | || || | | || Sbjct 5340 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 5281 Query 139992 CGTTGATGCCCTGCAATG-AGTCATCACTTTCGATCACCACACACGAACTAAATTGGCGT 140050 |||| ||| | ||| | ||| | | || |||| || || || || || ||||| Sbjct 5280 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 5222 Query 140051 GTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGAT 140094 || ||||| ||||| || | |||||| || || || || || || Sbjct 5221 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 5178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 138767 CCTTCTTTCGATCCTTTAA--CCGATACAATCCCGCGAGGCGGTTCAATACCGTTTGTGC 138824 || |||||||| |||||| | |||| | ||||| || |||||||||||||| ||| Sbjct 6514 CCGTCTTTCGACGCTTTAATGCTGATATGA--CCGCGCGGTGGTTCAATACCGTTGGTGG 6457 Query 138825 TGTTAGATACCTGAGAAGACGACTCACAAGGCATCAGCGCCGACAGTGTACTGTTACGAA 138884 ||| || | ||| ||||| | |||| | |||||||| || || || ||| ||| || | Sbjct 6456 CGTTCGAGATCTGGGAAGAGGTCTCAGACGGCATCAGGGCAGAGAGCGTAGAGTTGCGCA 6397 Query 138885 TGCCATATTTTTTCAGGTCTTCGCGCAGTTCTTCCCAATCCA 138926 ||| | |||||| ||| ||||| ||||||| |||| Sbjct 6396 GGCCGTGGGTTTTCACCGATTCACGCAGCGCTTCCCAGTCCA 6355 >seq222524 Length=8439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 55869 TTCCGTAAAGGTGCGCGAAATAACGTCACGTTGTTGGTCTGGAGTCAGACTATTGAATCT 55928 ||| |||||||| |||| ||| |||||||| || || ||||| |||| | || || | Sbjct 4034 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 4093 Query 55929 TACGGCATATCCGCTAACGCGAATGGTTAGTTGCGGATACTTATCAGG 55976 |||||||| ||| |||||||||||| || |||||||| || || || Sbjct 4094 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGG 4141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529087224338480