Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq65234 147 2e-30 seq260686 116 4e-21 seq93888 89.7 6e-13 >seq65234 Length=1614 Score = 147 bits (162), Expect = 2e-30 Identities = 265/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 143017 TAGTCCATATGACGAATACGGTTTTCATCGACACCTTTGTTGTTTTTCAGAACGAGCAGA 143076 || || | |||||| | | ||||| || | ||| | || ||||| | ||| | | | Sbjct 674 TAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 733 Query 143077 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 143136 ||||||| ||| | |||||| || || ||| || |||| || || || || | | |||| Sbjct 734 TTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCA 793 Query 143137 CCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCAGTA 143196 ||||| ||||| ||||| || || | ||||| ||||| | || |||||| || ||| Sbjct 794 CCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTA 853 Query 143197 TGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTAATA 143256 || |||| || | | ||| || ||| ||| ||||| |||| ||||||| Sbjct 854 TGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATG 913 Query 143257 CCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTTGCAGTTTTGTTAATAGAT 143316 || || ||||| |||| ||||| |||| | |||| | | || |||||||| Sbjct 914 CCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAG 973 Query 143317 TTCAGTGAGTCACCTGC---TTCAATAACAACACAAGAACTAAATTGACGGGTTGGAGTA 143373 || | | | | |||| |||||| | |||||||||||||||||||| ||||| || Sbjct 974 TTTA---AATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTT 1030 Query 143374 CGTGCACCAGCCATAATAGGAGTAGG 143399 | | | || | |||||| || || || Sbjct 1031 CTTACTCCTGACATAATCGGTGTGGG 1056 >seq260686 Length=13603 Score = 116 bits (128), Expect = 4e-21 Identities = 277/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 142992 CATCAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACC 143051 |||||| | ||| | ||| | ||||||||||||||||| | ||||| | || || || Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 143052 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 143111 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 143112 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 143171 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 143172 TTTCCAGAATGGAATAACACCAGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTC 143231 || |||| ||||| || || || ||||||| || || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 143232 AGCACGAATCATACCAACGTTAATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 143291 ||||| || ||| ||||||| || ||||| ||||| | ||||| ||| | | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 143292 TGAGTTTGCAGTTTTGTTAATAGATTTCAGTGAGTCACCTGCTTCAATAACAACACAAGA 143351 | | | | || |||||| || | || ||| || ||||| | || || || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 143352 ACTAAATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAACCT 143410 || || || || || || || || | || | |||||| || || |||| ||||| || Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 >seq93888 Length=1140 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 144607 TTGTTCAACGTGATTAGAATAGATGTGCGTATTGCCGCCTGAGAACACTAAATCGCCAGG 144666 |||||| | |||||||||||||| |||||||| ||| |||| | || |||||||| | Sbjct 284 TTGTTCTAAGTGATTAGAATAGAGGTGCGTATCGCCCCCTGTCCAAACAAAATCGCC--G 227 Query 144667 AATA--AGATTACACATCTTAGCTACAATATGCACAAG-AGCGGCGTAAGAGGCGATATT 144723 | | |||| |||| || ||| || ||||| || || |||| | || ||||||||| Sbjct 226 ACTTCGAGATCACACTGCTGAGCGACCATATGGACCAGTAGCG-CATAGCTGGCGATATT 168 Query 144724 AAATGGCAATCCTAAGAACACGTCAACAGAACGTTGGTA 144762 ||| || || ||||| || || ||| ||| || || || Sbjct 167 AAAGGGTAAGCCTAAAAAGACATCACAAGAGCGCTGATA 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545092321166760