Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq103047 154 4e-33 seq479812 125 2e-24 seq153530 102 2e-17 >seq103047 Length=44447 Score = 154 bits (170), Expect = 4e-33 Identities = 255/364 (70%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 8755 CGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGAC 8814 ||||| |||| | || | ||||| | | |||||||||||||||||| || ||| | Sbjct 2186 CGCGAGCACGGCGGTCTGAGCATGATCATGATCGACTACCTGCAGCTGATG-CGCGTGCC 2128 Query 8815 GGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAA 8874 | | | || || | || | ||| ||||||| || || ||| | || || | Sbjct 2127 GTCACTG--TCCGATAACCGTACGCTGGAGATCGCCGAGATCTCACGCTCGCTTAAGGCA 2070 Query 8875 ATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAG 8934 | ||||| || || | || ||| | | ||||||||||||||||| || || ||| Sbjct 2069 CTGGCGAAAGAGCTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCCCTGGAG 2010 Query 8935 AATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAG 8994 | || | | ||||| || |||| ||||| ||||| || || || | ||||||||| Sbjct 2009 CAGCGTGCCGATAAGCGCCCGGTCAACTCCGACCTGCGTGAATCCGGCTCCATCGAGCAG 1950 Query 8995 GATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCG--CAG 9052 ||||||||| ||||| | ||||||||||| |||||||| ||| || |||||| | | Sbjct 1949 GATGCCGACCTGATCATGTTTATCTACCGTGATGAGGTGTATCACGAAAACAGCGATCTG 1890 Query 9053 ATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTAC 9112 | | ||| ||| || ||||| | | |||||||| ||||| || || |||||||| | Sbjct 1889 AAAGGGGT--GGCGGAGATCATTCTGGGTAAGCAGCGTAACGGCCCCATCGGCACCGTGC 1832 Query 9113 GGCT 9116 | || Sbjct 1831 GCCT 1828 >seq479812 Length=451 Score = 125 bits (138), Expect = 2e-24 Identities = 181/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 8777 TGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGG 8836 |||| || | |||||||||||||||||| | ||| ||| || || | || | Sbjct 389 TGATCGTGATCGACTACCTGCAGCTGATGA-GCGTGCCGG--GCAACAGCGAGAACCGCG 333 Query 8837 CCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTC 8896 | ||||| | |||| || ||||| | || || | || |||||||| |||| | Sbjct 332 CGACCGAAATTTCCGAGATCTCGCGTTCGCTGAAGGGCCTGGCCAAGGAACTGCACGTGC 273 Query 8897 CGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCG 8956 || |||| || ||||| ||||| || || ||| || | || | ||||||| || | Sbjct 272 CGGTCATTGCACTGTCCCAGCTCAACCGCTCGCTGGAAACACGTACCGACAAGCGCCCGG 213 Query 8957 TCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTA 9016 | ||| |||| || ||||| ||||| || |||||||||||||| ||| ||||| |||| | Sbjct 212 TGATGGCCGACCTTCGCGAATCGGGCGCAATCGAGCAGGATGCGGACATGATCGTCTTCA 153 Query 9017 TCTACCGCGATGA 9029 |||||||||| || Sbjct 152 TCTACCGCGACGA 140 >seq153530 Length=10618 Score = 102 bits (112), Expect = 2e-17 Identities = 223/330 (68%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTC 8847 || ||||| ||| ||||| || ||| | ||| | || | |||| ||| || ||| | Sbjct 9373 GATTACCTTCAGTTGATG-CGAGTGCCTGCG-CTGACC-GAAAACCGGACCTTAGAGATT 9317 Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 || || || || || | | ||| | ||||| ||||| | || || | |||| Sbjct 9316 GCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCC 9257 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 | || |||||||| || | ||| | ||| || | || ||||| |||| || ||| Sbjct 9256 TTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGAT 9197 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 |||| ||||| || |||| ||||||||||||||| ||||| | |||||||| || || Sbjct 9196 TTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGAC 9137 Query 9028 GAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAG 9087 ||||| ||| || |||| | | || | || ||||| || || | |||||| Sbjct 9136 GAGGTGTATCACGAAAACAGTGATCTTAAAGGCATCGCGGAAATTATTATCGGTAAGCAG 9077 Query 9088 CGAAACGGGCCGATTGGCACCGTACGGCTC 9117 || || || || || || || || || ||| Sbjct 9076 CGTAATGGTCCTATCGGTACGGTGCGACTC 9047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126789477876516